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(-) Description

Title :  STRUCTURE OF NOP9
 
Authors :  K. Ye, B. Wang
Date :  15 Dec 16  (Deposition) - 25 Jan 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Pumilio Repeat-Containing Protein, Rna-Binding Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Wang, K. Ye
Nop9 Binds The Central Pseudoknot Region Of 18S Rrna
Nucleic Acids Res. V. 45 3559 2017
PubMed-ID: 28053123  |  Reference-DOI: 10.1093/NAR/GKW1323

(-) Compounds

Molecule 1 - NUCLEOLAR PROTEIN 9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NOP9
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: S288C
    Synonym: PUMILIO DOMAIN-CONTAINING PROTEIN NOP9

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5WTX)

(-) Sites  (0, 0)

(no "Site" information available for 5WTX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WTX)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ala A:277 -Glu A:278
2Asp A:317 -Arg A:318
3Ala A:328 -Asp A:329
4Asp A:383 -Thr A:384
5Thr A:384 -Thr A:385

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WTX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WTX)

(-) Exons   (0, 0)

(no "Exon" information available for 5WTX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:543
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhh.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wtx A  49 PQMFFGVLDREELEYFKQAESTLQLDAFEEKFQFVTSIIEEAKGKELKLVTSQITSKLMERVILECDETQLKDIFQSFNGVFFGLSCHKYASHVLETLFVRSAALVERELLTPVTMENMFLFMLNELKPHLKTMMNHQYASHVLRLLILILSSKTLPNNKVYQTPESFKSELRDIITTLYKGFTNGAESRSDISQSTITKFREYSVDKVASPVIQLIIQVEGIFDRDRSFWRLVFNTADEKDPKEESFLEYLLSDPVGSHFLENVIGSARLKYVERLYRLYMKDRIVKLAKRDTTGAFVVRALLEHLKEKDVKQILDAVVPELSMLLNSNMDFGTAIINASNKQGGYLRDDVIAQLIQKYYPEKSDAKNILESCLLLSASTLGNTRDDWPTAEERRRSVFLEQLIDYDDKFLNITIDSMLALPEERLIQMCYHGVFSHVVEHVLQTTRVDIIKRKMLLNILSKESVNLACNVYGSHIMDKLWEFTAKLTLYKERIARALVLETEKVKNSIYGRQVWKNWKLELYVRKMWDWKKLIKEQEFEIF 633
                                    58        68       |81        91       101       111       121       131       141       151       161  ||   182       192       202       212       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630   
                                                      76|                                                                                 164|                                         220|                                                                                                                                                                                                                                                                                                                                                                                                
                                                       80                                                                                  176                                          249
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WTX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WTX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WTX)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5wtx)
 
  Cis Peptide Bonds
    Ala A:277 - Glu A:278   [ RasMol ]  
    Ala A:328 - Asp A:329   [ RasMol ]  
    Asp A:317 - Arg A:318   [ RasMol ]  
    Asp A:383 - Thr A:384   [ RasMol ]  
    Thr A:384 - Thr A:385   [ RasMol ]  
 

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  5wtx
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  NOP9_YEAST | P47077
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOP9_YEAST | P47077: 5svd 5wty

(-) Related Entries Specified in the PDB File

5wty