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(-) Description

Title :  CRYSTAL STRUCTURE OF DROSOPHILA ENOLASE
 
Authors :  Z. Zhang, Z. Shi
Date :  02 Dec 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Enolase, Hydrolyase, Metabolism, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Sun, B. Xu, X. Liu, Z. Zhang, Z. Su
Crystal Structure Of Enolase From Drosophila Melanogaster.
Acta Crystallogr F Struct V. 73 228 2017 Biol Commun
PubMed-ID: 28368282  |  Reference-DOI: 10.1107/S2053230X17004022

(-) Compounds

Molecule 1 - ENOLASE
    Chains: A
    EC Number: 4.2.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS
    Fragment: UNP RESIDUES 69-500
    Gene: ENO, CG17654
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE DEHYDRATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric Unit (5, 8)
No.NameCountTypeFull Name
1CD2Ligand/IonCADMIUM ION
2CL1Ligand/IonCHLORIDE ION
3CO1Ligand/IonCOBALT (II) ION
4GOL2Ligand/IonGLYCEROL
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CO-1Ligand/IonCOBALT (II) ION
4GOL4Ligand/IonGLYCEROL
5SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:62 , HIS A:125 , HIS A:258 , HOH A:722 , HOH A:956binding site for residue CD A 601
2AC2SOFTWAREASP A:312 , GLU A:361 , ASP A:386 , CL A:604 , HOH A:707 , HOH A:720binding site for residue CD A 602
3AC3SOFTWAREHIS A:225 , GLU A:277 , HOH A:725binding site for residue CO A 603
4AC4SOFTWAREASP A:386 , LYS A:411 , LYS A:462 , CD A:602 , SO4 A:606 , HOH A:848binding site for residue CL A 604
5AC5SOFTWARESER A:286 , ASN A:287 , LYS A:288 , LEU A:347 , PHE A:351 , HOH A:756binding site for residue SO4 A 605
6AC6SOFTWAREGLY A:105 , ALA A:106 , ARG A:440 , SER A:441 , CL A:604 , HOH A:848binding site for residue SO4 A 606
7AC7SOFTWAREARG A:99 , TYR A:198 , GLN A:477 , GLU A:484 , HOH A:713 , HOH A:858binding site for residue GOL A 607
8AC8SOFTWAREARG A:82 , ASN A:84 , LYS A:127 , HIS A:257 , LYS A:260 , HOH A:702binding site for residue GOL A 608

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:378 -A:378

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5WRO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WRO)

(-) Exons   (0, 0)

(no "Exon" information available for 5WRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeee.....eeeeeeeee..eeeeee.....................hhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh........ee.eeeee.hhhh.......eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhh.....eeeee.hhhh.ee..ee.........hhhhh.hhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhh..eeee......hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhh.....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wro A  62 GAMDPEFTIKAIKARQIYDSRGNPTVEVDLTTELGLFRAAVPSGASTGVHEALELRDNDKANYHGKSVLKAVGHVNDTLGPELIKANLDVVDQASIDNFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHIADLAGNKEIILPVPAFNVINGGSHAGNKLAMQEFMILPTGATSFTEAMKMGSEVYHHLKNVIKAKFGLDATAVGDEGGFAPNIQSNKEALNLISDAIAKAGYTGKIEIGMDVAASEFYKDGQYDLDFKNEKSDKSQWLPADKLANLYQEFIKDFPIVSIEDPFDQDHWEAWSNLTGCTDIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGTVTESIAAHLLAKKNGWGTMVSHRSGETEDSFIGDLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEEIGAGVKFAGKSFRKPQ 500
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WRO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WRO)

(-) Gene Ontology  (10, 10)

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