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(-) Description

Title :  BROMODOMAIN OF PF3D7_1475600 FROM PLASMODIUM FALCIPARUM COMPLEXED WITH PEPTIDE H4K5AC
 
Authors :  C. F. D. Hou, P. Loppnau, A. Dong, C. Bountra, A. M. Edwards, C. H. Arrowsm R. Hui, J. R. Walker, Structural Genomics Consortium (Sgc)
Date :  11 May 17  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A,P
Keywords :  Bromodomain-Acetylated Histone Complex, Structural Genomics Consortium (Sgc), Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. D. Hou, P. Loppnau, A. Dong, C. Bountra, A. M. Edwards, C. H. Arrowsmith, R. Hui, J. R. Walker, Structural Genomics Consortium (Sgc)
Bromodomain Of Pf3D7_1475600 From Plasmodium Falciparum Complexed With Peptide H4K5Ac
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BROMODOMAIN PROTEIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRARE2
    Expression System Strain: BL21(DE3)-V3R
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BROMODOMAIN (UNP RESIDUES 8-125)
    Gene: PF14_0724, PF3D7_1475600
    Organism Scientific: PLASMODIUM FALCIPARUM (ISOLATE 3D7)
    Organism Taxid: 36329
    Strain: ISOLATE 3D7
 
Molecule 2 - H4K5AC PEPTIDE
    Chains: P
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE
2CL2Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:27 , LYS A:28binding site for residue CL A 201
2AC2SOFTWAREILE A:91binding site for residue CL A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VS7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 5VS7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 5vs7 A   1 GYDEIEELKSKNEVLTNLLNKLIAFDKKRIFLYPVNVQLVPDYLNVIKEPMDFTTMKQKLQNFKYKSFQEFEKDVLLIINNCYTYNDPSTIYYKFAEDIETYYKKLNIKIQTKYMNIHL 119
                                    10        20        30        40        50        60        70        80        90       100       110         


Chain P from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 5vs7 P   2 GRGxG   6
                               | 
                               5-ALY
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VS7)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IK82_PLAF7 | Q8IK82: 4nxj

(-) Related Entries Specified in the PDB File

4nxj 4NXJ CONTAINS THE SAME PROTEIN, BUT WITHOUT LIGAND.