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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE FROM BRUCELLA MELITENSIS IN COMPLEX WITH NAD
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  28 Apr 17  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Sdr, Short Chain Dehydrogenase Reductase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Mayclin, J. Abendroth, D. D. Lorimer, T. E. Edwards
Crystal Structure Of 3-Oxoacyl-[Acyl-Carrier Protein] Reductase From Brucella Melitensis In Complex With Nad
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 47-300
    Gene: BMEI0026
    Organism Scientific: BRUCELLA MELITENSIS BIOTYPE 1 (STRAIN 16M / ATCC 23456 / NCTC 10094)
    Organism Taxid: 224914
    Strain: 16M / ATCC 23456 / NCTC 10094

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , ARG A:14 , ARG A:15 , GLY A:16 , ILE A:17 , ASP A:36 , ARG A:37 , SER A:59 , ASP A:60 , LEU A:61 , ASN A:87 , ALA A:88 , GLY A:89 , ILE A:143 , SER A:144 , SER A:145 , TYR A:158 , LYS A:162 , PRO A:188 , GLY A:189 , ILE A:191 , THR A:193 , MET A:195 , THR A:196 , ACT A:302 , HOH A:415 , HOH A:423 , HOH A:428 , HOH A:463 , HOH A:467 , HOH A:492 , HOH A:548binding site for residue NAD A 301
2AC2SOFTWARESER A:145 , SER A:147 , ARG A:155 , TYR A:158 , GLY A:189 , NAD A:301 , HOH A:416 , HOH A:513binding site for residue ACT A 302
3AC3SOFTWAREGLU A:41 , ARG A:48 , ALA A:55 , PHE A:56 , ARG B:5binding site for residue EDO A 303
4AC4SOFTWAREGLY B:12 , ARG B:14 , ARG B:15 , GLY B:16 , ILE B:17 , ASP B:36 , ARG B:37 , SER B:59 , ASP B:60 , LEU B:61 , ASN B:87 , GLY B:89 , VAL B:112 , ILE B:143 , SER B:144 , SER B:145 , TYR B:158 , LYS B:162 , PRO B:188 , GLY B:189 , ILE B:191 , THR B:193 , MET B:195 , THR B:196 , ACT B:302 , HOH B:409 , HOH B:435 , HOH B:456 , HOH B:469 , HOH B:481 , HOH B:515binding site for residue NAD B 301
5AC5SOFTWARESER B:145 , SER B:147 , ARG B:155 , TYR B:158 , GLY B:189 , NAD B:301 , HOH B:411 , HOH B:504binding site for residue ACT B 302
6AC6SOFTWAREGLY C:12 , ARG C:14 , ARG C:15 , GLY C:16 , ILE C:17 , ASP C:36 , SER C:59 , ASP C:60 , LEU C:61 , ASN C:87 , ALA C:88 , GLY C:89 , ILE C:143 , SER C:144 , SER C:145 , TYR C:158 , LYS C:162 , PRO C:188 , GLY C:189 , ILE C:191 , THR C:193 , MET C:195 , THR C:196 , ACT C:302 , HOH C:403 , HOH C:417 , HOH C:429 , HOH C:484 , HOH C:533binding site for residue NAD C 301
7AC7SOFTWARESER C:145 , SER C:147 , ARG C:155 , TYR C:158 , GLY C:189 , NAD C:301 , HOH C:405binding site for residue ACT C 302
8AC8SOFTWAREGLY D:12 , ARG D:14 , ARG D:15 , GLY D:16 , ILE D:17 , ASP D:36 , ARG D:37 , SER D:59 , ASP D:60 , LEU D:61 , ASN D:87 , GLY D:89 , ILE D:143 , SER D:144 , SER D:145 , TYR D:158 , LYS D:162 , PRO D:188 , GLY D:189 , ILE D:191 , THR D:193 , ASP D:194 , MET D:195 , THR D:196 , ACT D:302 , HOH D:421 , HOH D:422 , HOH D:445 , HOH D:462binding site for residue NAD D 301
9AC9SOFTWARESER D:145 , SER D:147 , ARG D:155 , TYR D:158 , GLY D:189 , NAD D:301 , HOH D:408 , HOH D:522binding site for residue ACT D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VN2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5VN2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VN2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VN2)

(-) Exons   (0, 0)

(no "Exon" information available for 5VN2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..hhhhh..eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vn2 A   2 SRQRPVALVTGGRRGIGLGIARALAAKGFDLAITDRESDEAVIHELRGLGGKVAFFKSDLAAVKTHEATVFAVLDAFGGIDCLVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSVSSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGGLVPMKRWGEASDVGAIVAGLAGGDFIFATGSAIHADGGLSIAKL 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.......hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..hhhhh..eeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vn2 B   0 HMSRQRPVALVTGGRRGIGLGIARALAAKGFDLAITDRESDEAVIHELRGLGGKVAFFKSDLAAVKTHEATVFAVLDAFGGIDCLVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSVSSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGGLVPMKRWGEASDVGAIVAGLAGGDFIFATGSAIHADGGLSIAKL 254
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249     


Chain C from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee...hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhh..hhhhh..eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vn2 C  -5 HHHHSRQRPVALVTGGRRGIGLGIARALAAKGFDLAITDRESDEAVIHELRGLGGKVAFFKSDLAAVKTHEATVFAVLDAFGGIDCLVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSVSSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGGLVPMKRWGEASDVGAIVAGLAGGDFIFATGSAIHADGGLSIAKL 254
                               ||    7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       
                              -2|                                                                                                                                                                                                                                                            
                                2                                                                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhh..eeeeee.....hhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh..hhhhh..eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vn2 D   2 SRQRPVALVTGGRRGIGLGIARALAAKGFDLAITDRESDEAVIHELRGLGGKVAFFKSDLAAVKTHEATVFAVLDAFGGIDCLVNNAGMGAVERGDFLALKPENFDTIMDVNLRGTVFFTQAVVKAMLAADEVRFPRSIVTISSVSSVMTSPERLDYCISKAGLTAFVQGLALRLAEARIGVFEVRPGIIRTDMTAKVAARYDALIEGGLVPMKRWGEASDVGAIVAGLAGGDFIFATGSAIHADGGLSIAKL 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VN2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VN2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VN2)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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