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(-) Description

Title :  HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH 2,2'BIPYRIDINE
 
Authors :  B. V. Plapp, S. Baskar Raj
Date :  19 Apr 17  (Deposition) - 03 May 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alcohol Dehydrogenase, 2, 2'Bipyridine, Horse Liver, Zinc Chelation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. V. Plapp, B. R. Savarimuthu, D. J. Ferraro, J. K. Rubach, E. N. Brown, S. Ramaswamy
Horse Liver Alcohol Dehydrogenase: Zinc Coordination And Catalysis.
Biochemistry 2017
PubMed-ID: 28640600  |  Reference-DOI: 10.1021/ACS.BIOCHEM.7B00446
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALCOHOL DEHYDROGENASE E CHAIN
    Chains: A
    EC Number: 1.1.1.1
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
10BP1Ligand/Ion2,2'-BIPYRIDINE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
10BP2Ligand/Ion2,2'-BIPYRIDINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:46 , HIS A:67 , CYS A:174 , 0BP A:403binding site for residue ZN A 401
2AC2SOFTWARECYS A:97 , CYS A:100 , CYS A:103 , CYS A:111binding site for residue ZN A 402
3AC3SOFTWARECYS A:46 , SER A:48 , HIS A:67 , CYS A:174 , VAL A:292 , ZN A:401binding site for residue 0BP A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VJG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:61 -Pro A:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VJG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VJG)

(-) Exons   (0, 0)

(no "Exon" information available for 5VJG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.......eeeeeee......eeeeeeeeee.hhhhhhhhh........ee....eeeeeeee...........eeee........hhhhhh........................eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh..eeehhhhh..hhhhhhhhhh.....eeee...hhhhhhhhhhhh.....eeee.............hhhhhh..eeee.hhhhhhhhhhhhhhhhhhhh....hhhhh.eeee..hhhhhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vjg A   1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VJG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VJG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VJG)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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    Leu A:61 - Pro A:62   [ RasMol ]  
 
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  5vjg
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  ADH1E_HORSE | P00327
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  1.1.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADH1E_HORSE | P00327: 1a71 1a72 1adb 1adc 1adf 1adg 1axe 1axg 1bto 1het 1heu 1hf3 1hld 1ju9 1lde 1ldy 1mg0 1mgo 1n8k 1n92 1p1r 1qlh 1qlj 1qv6 1qv7 1ye3 2jhf 2jhg 2ohx 2oxi 3bto 3oq6 4dwv 4dxh 4nfh 4nfs 4ng5 4xd2 5adh 5cdg 5cds 5cdt 5cdu 5kcp 5kcz 5kj1 5kj6 5kjc 5kje 5kjf 5vj5 5vkr 5vl0 5vn1 6adh 7adh 8adh

(-) Related Entries Specified in the PDB File

5vj5 5VJ5 HAS THE SAME PROTEIN, BUT THE ZINC CHELATOR IN 5VJ5 IS 1,10- PHENANTHROLINE, WHEREAS IN THE PRESENT DEPOSITION THE ZINC CHELATOR IS 2,2'-BIPYRIDINE.
5vkr
5vl0