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(-) Description

Title :  DESIGN OF A NOVEL CYCLIC PEPTIDE THAT ALLEVIATES SYMPTOMS IN A MURINE MODEL OF INFLAMMATORY BOWEL DISEASE
 
Authors :  N. L. Daly, C. Cobos Caceres
Date :  28 Mar 17  (Deposition) - 10 May 17  (Release) - 28 Jun 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Inflammatory Bowel Disease, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Cobos Caceres, P. S. Bansal, S. Navarro, D. Wilson, L. Don, P. Giacomin, A. Loukas, N. L. Daly
An Engineered Cyclic Peptide Alleviates Symptoms Of Inflammation In A Murine Model Of Inflammatory Bowel Disease.
J. Biol. Chem. V. 292 10288 2017
PubMed-ID: 28473469  |  Reference-DOI: 10.1074/JBC.M117.779215

(-) Compounds

Molecule 1 - CYC-MC12
    Chains: A
    Engineered: YES
    Organism Scientific: HELIANTHUS ANNUUS
    Organism Taxid: 4232
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5VAV)

(-) Sites  (0, 0)

(no "Site" information available for 5VAV)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:3 -A:11

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Trp A:7 -Pro A:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VAV)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:14
                                             
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                  5vav A  1 GRCTQAWPPICFPD 14
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VAV)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  Cis Peptide Bonds
    Trp A:7 - Pro A:8   [ RasMol ]  
 

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  5vav
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 Related Entries

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(-) Related Entries Specified in the PDB File

5vfw