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(-) Description

Title :  CRYSTAL STRUCTURE OF CYANASE FROM T. URTICAE
 
Authors :  C. R. Schlachter, M. Chruszcz
Date :  19 Jan 17  (Deposition) - 21 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Tetranychus Urticae, Cyanase, Agricultural Pest, Two-Spotted Spidermite, Spider Mite, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. R. Schlachter, V. Klapper, N. Wybouw, T. Radford, T. Van Leeuwen, M. Grbic, M. Chruszcz
Structural Characterization Of A Eukaryotic Cyanase From Tetranychus Urticae.
J. Agric. Food Chem. 2017
PubMed-ID: 28613863  |  Reference-DOI: 10.1021/ACS.JAFC.7B01333

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMBPCS1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: TWO-SPOTTED SPIDER MITE
    Organism Scientific: TETRANYCHUS URTICAE
    Organism Taxid: 32264
    Synonym: CYANASE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5UK3)

(-) Sites  (0, 0)

(no "Site" information available for 5UK3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UK3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UK3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UK3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UK3)

(-) Exons   (0, 0)

(no "Exon" information available for 5UK3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk3 A  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKG 156
                                    31        41        51        61        71        81        91       101       111       121       131       141       151     


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk3 B  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQL 158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain C from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 C  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLD 159
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        


Chain D from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 D  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLD 159
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        


Chain E from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk3 E  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQL 158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain F from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 F  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLD 159
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        


Chain G from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 G  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLD 159
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        


Chain H from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 H  21 SNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQL 158
                                    30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain I from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk3 I  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLDAGE 162
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161 


Chain J from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uk3 J  22 NQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKFLPYYKGQLD 159
                                    31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UK3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UK3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UK3)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 5uk3)
 

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