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(-) Description

Title :  CRYOEM STRUCTURE OF AN INFLUENZA VIRUS RECEPTOR-BINDING SITE ANTIBODY-ANTIGEN INTERFACE - CLASS 3
 
Authors :  Y. Liu, J. Pan, T. Caradonna, S. Jenni, D. D. Raymond, A. G. Schmidt, S. C. N. Grigorieff
Date :  19 Jan 17  (Deposition) - 31 May 17  (Release) - 21 Jun 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I
Keywords :  Viral Glycoprotein, Hemagglutinin, Antibody Fragment, Viral Protein- Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, J. Pan, S. Jenni, D. D. Raymond, T. Caradonna, K. T. Do, A. G. Schmidt, S. C. Harrison, N. Grigorieff
Cryoem Structure Of An Influenza Virus Receptor-Binding Sit Antibody-Antigen Interface.
J. Mol. Biol. V. 429 1829 2017
PubMed-ID: 28506635  |  Reference-DOI: 10.1016/J.JMB.2017.05.011

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1
    Chains: A, C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HI-5
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 18-339
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS (A/SOLOMON ISLANDS/3/2006(H1N1))
    Organism Taxid: 464623
    Strain: A/SOLOMON ISLANDS/3/2006(H1N1)
 
Molecule 2 - HEMAGGLUTININ HA2
    Chains: B, D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HI-5
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 344-516
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 464623
    Strain: A/SOLOMON ISLANDS/3/2006(H1N1)
 
Molecule 3 - SCFV
    Chains: G, H, I
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293T
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789
Asymmetric/Biological Unit : ABCDEFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 33)

Asymmetric/Biological Unit (2, 33)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2NAG30Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:15binding site for Mono-Saccharide NAG A 408 bound to ASN A 15
02AC2SOFTWAREASN A:27binding site for Mono-Saccharide NAG A 409 bound to ASN A 27
03AC3SOFTWAREASN A:58binding site for Poly-Saccharide residues NAG A 404 through NAG A 405 bound to ASN A 58
04AC4SOFTWAREASN A:68 , GLU A:90 , ASN A:91 , ARG A:224binding site for Poly-Saccharide residues BMA A 401 through NAG A 403 bound to ASN A 91
05AC5SOFTWAREPRO A:128 , ASN A:129binding site for Mono-Saccharide NAG A 406 bound to ASN A 129
06AC6SOFTWAREASN A:163 , TYR A:201binding site for Mono-Saccharide NAG A 407 bound to ASN A 163
07AC7SOFTWAREASN A:290 , SER A:292binding site for Mono-Saccharide NAG A 410 bound to ASN A 290
08AC8SOFTWAREGLU B:647 , GLU B:650 , SER B:651 , ASN B:654binding site for Mono-Saccharide NAG B 701 bound to ASN B 654
09AC9SOFTWAREASN C:15binding site for Mono-Saccharide NAG C 408 bound to ASN C 15
10AD1SOFTWAREASN C:27binding site for Mono-Saccharide NAG C 409 bound to ASN C 27
11AD2SOFTWAREASN C:58binding site for Poly-Saccharide residues NAG C 404 through NAG C 405 bound to ASN C 58
12AD3SOFTWAREASN C:68 , GLU C:90 , ASN C:91 , ARG C:224binding site for Poly-Saccharide residues BMA C 401 through NAG C 403 bound to ASN C 91
13AD4SOFTWAREPRO C:128 , ASN C:129binding site for Mono-Saccharide NAG C 406 bound to ASN C 129
14AD5SOFTWAREASN C:163 , TYR C:201binding site for Mono-Saccharide NAG C 407 bound to ASN C 163
15AD6SOFTWAREASN C:290 , SER C:292binding site for Mono-Saccharide NAG C 410 bound to ASN C 290
16AD7SOFTWAREGLU D:647 , GLU D:650 , SER D:651 , ASN D:654binding site for Mono-Saccharide NAG D 701 bound to ASN D 654
17AD8SOFTWAREASN E:15binding site for Mono-Saccharide NAG E 408 bound to ASN E 15
18AD9SOFTWAREASN E:27binding site for Mono-Saccharide NAG E 409 bound to ASN E 27
19AE1SOFTWAREASN E:58binding site for Poly-Saccharide residues NAG E 404 through NAG E 405 bound to ASN E 58
20AE2SOFTWAREASN E:68 , GLU E:90 , ASN E:91 , ARG E:224binding site for Poly-Saccharide residues BMA E 401 through NAG E 403 bound to ASN E 91
21AE3SOFTWAREPRO E:128 , ASN E:129binding site for Mono-Saccharide NAG E 406 bound to ASN E 129
22AE4SOFTWAREASN E:163 , TYR E:201binding site for Mono-Saccharide NAG E 407 bound to ASN E 163
23AE5SOFTWAREASN E:290 , SER E:292binding site for Mono-Saccharide NAG E 410 bound to ASN E 290
24AE6SOFTWAREGLU F:647 , GLU F:650 , SER F:651 , ASN F:654binding site for Mono-Saccharide NAG F 701 bound to ASN F 654

(-) SS Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1A:8 -B:637
2A:46 -A:278
3A:59 -A:71
4A:94 -A:139
5A:282 -A:306
6B:644 -B:648
7C:8 -D:637
8C:46 -C:278
9C:59 -C:71
10C:94 -C:139
11C:282 -C:306
12D:644 -D:648
13E:8 -F:637
14E:46 -E:278
15E:59 -E:71
16E:94 -E:139
17E:282 -E:306
18F:644 -F:648
19G:23 -G:89
20H:23 -H:89
21I:23 -I:89

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser G:7 -Pro G:8
2Ser H:7 -Pro H:8
3Ser I:7 -Pro I:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UK1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UK1)

(-) Exons   (0, 0)

(no "Exon" information available for 5UK1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........ee..ee......eee...........ee.....ee....hhhhhhhh...............eee...............hhhhhhhhh............hhhhhh..ee....eeeee....ee....eee.ee.......eeeeee.....eeeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee...eee.......eee........ee.eee..eee.............eee..........eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 A   4 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISRESWSYIVEKPNPENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTTTGVSASCSHNGESSFYKNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQRALYHTENAYVSVVSSHYSRKFTPEIAKRPKVRDREGRINYYWTLLEPGDTIIFEANGNLIAPRYAFALSRGFGSGIINSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPS 326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323   


Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh.....eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...eeee....hhhhhhhhhh.......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 B 501 GLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTYDYPKYSEESKLNREKI 673
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670   


Chain C from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........ee..ee......eee...........ee.....ee....hhhhhhhh...............eee...............hhhhhhhhh............hhhhhh..ee....eeeee....ee....eee.ee.......eeeeee.....eeeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee...eee.......eee........ee.eee..eee.............eee..........eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 C   4 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISRESWSYIVEKPNPENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTTTGVSASCSHNGESSFYKNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQRALYHTENAYVSVVSSHYSRKFTPEIAKRPKVRDREGRINYYWTLLEPGDTIIFEANGNLIAPRYAFALSRGFGSGIINSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPS 326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323   


Chain D from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh.....eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...eeee....hhhhhhhhhh.......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 D 501 GLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTYDYPKYSEESKLNREKI 673
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670   


Chain E from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.........ee..ee......eee...........ee.....ee....hhhhhhhh...............eee...............hhhhhhhhh............hhhhhh..ee....eeeee....ee....eee.ee.......eeeeee.....eeeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee...eee.......eee........ee.eee..eee.............eee..........eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 E   4 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISRESWSYIVEKPNPENGTCYPGHFADYEELREQLSSVSSFERFEIFPKESSWPNHTTTGVSASCSHNGESSFYKNLLWLTGKNGLYPNLSKSYANNKEKEVLVLWGVHHPPNIGDQRALYHTENAYVSVVSSHYSRKFTPEIAKRPKVRDREGRINYYWTLLEPGDTIIFEANGNLIAPRYAFALSRGFGSGIINSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPS 326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323   


Chain F from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh.....eee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...eeee....hhhhhhhhhh.......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 F 501 GLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFIDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNDECMESVKNGTYDYPKYSEESKLNREKI 673
                                   510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670   


Chain G from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.......eeeee........eeeee.......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee....eeee...ee...eeeeeeeee.........eeeeee.....eeeeeee.....eee.......eeeeee....eeeeeeeeehhhhheeeeeee.......................eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 G   1 EIVLTQSPGTLSLSPGERATLSCRASQSISGYYLTWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGISPVITFGGGTNVEIKGVQLVESGGGLVQPGGSLRLSCAASGFTFNIYDMHWVRQAPGKGLEWVSGLTTGGDTSYSGSVRGRFSISRENAKNSLYLQMNNLRAGDTAAYFCVRGVREVGATGGDPFYYAMAVWGQGTTVTVSS 252
                                    10        20        30        40        50        60        70        80        90       100       110|      136       146       156       166       176       186       196       206       216       226       236       246      
                                                                                                                                       110|                                                                                                                             
                                                                                                                                        127                                                                                                                             


Chain H from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.......eeeee........eeeee.......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee....eeee...ee...eeeeeeeee.........eeeeee.....eeeeeee.....eee.......eeeeee....eeeeeeeeehhhhheeeeeee.......................eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 H   1 EIVLTQSPGTLSLSPGERATLSCRASQSISGYYLTWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGISPVITFGGGTNVEIKGVQLVESGGGLVQPGGSLRLSCAASGFTFNIYDMHWVRQAPGKGLEWVSGLTTGGDTSYSGSVRGRFSISRENAKNSLYLQMNNLRAGDTAAYFCVRGVREVGATGGDPFYYAMAVWGQGTTVTVSS 252
                                    10        20        30        40        50        60        70        80        90       100       110|      136       146       156       166       176       186       196       206       216       226       236       246      
                                                                                                                                       110|                                                                                                                             
                                                                                                                                        127                                                                                                                             


Chain I from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.......eeeee........eeeee.......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee....eeee...ee...eeeeeeeee.........eeeeee.....eeeeeee.....eee.......eeeeee....eeeeeeeeehhhhheeeeeee.......................eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uk1 I   1 EIVLTQSPGTLSLSPGERATLSCRASQSISGYYLTWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGISPVITFGGGTNVEIKGVQLVESGGGLVQPGGSLRLSCAASGFTFNIYDMHWVRQAPGKGLEWVSGLTTGGDTSYSGSVRGRFSISRENAKNSLYLQMNNLRAGDTAAYFCVRGVREVGATGGDPFYYAMAVWGQGTTVTVSS 252
                                    10        20        30        40        50        60        70        80        90       100       110|      136       146       156       166       176       186       196       206       216       226       236       246      
                                                                                                                                       110|                                                                                                                             
                                                                                                                                        127
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UK1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UK1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UK1)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  A7UPX0_9INFA | A7UPX0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A7UPX0_9INFA | A7UPX0: 5ug0 5ugy 5ujz 5uk0 5uk2
UniProtKB/TrEMBL
        A7UPX0_9INFA | A7UPX0: 3sm5 4hkx 4yjz 4yk4

(-) Related Entries Specified in the PDB File

5ujz 5uk0 5uk2