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(-) Description

Title :  CRYSTAL STRUCTURE OF THE KPC-2 BETA-LACTAMASE COMPLEXED WITH HYDROLYZED FAROPENEM
 
Authors :  O. A. Pemberton, Y. Chen
Date :  16 Jan 17  (Deposition) - 26 Apr 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Carbapenemase, Faropenem, Beta-Lactamase, Complex, Hydrolase- Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. A. Pemberton, X. Zhang, Y. Chen
Molecular Basis Of Substrate Recognition And Product Releas By The Klebsiella Pneumoniae Carbapenemase (Kpc-2).
J. Med. Chem. V. 60 3525 2017
PubMed-ID: 28388065  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00158

(-) Compounds

Molecule 1 - CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: BLA, KPC, KPC1
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573
    Synonym: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SFR1Ligand/Ion(2R)-2-[(1S,2R)-1-CARBOXY-2-HYDROXYPROPYL]-5-[(2R)-OXOLAN-2-YL]-2,3-DIHYDRO-1,3-THIAZOLE-4-CARBOXYLICACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:70 , LYS A:73 , TRP A:105 , SER A:130 , ASN A:132 , THR A:216 , LYS A:234 , THR A:235 , GLY A:236 , THR A:237 , HOH A:404 , HOH A:405 , HOH A:492binding site for residue SFR A 301
2AC2SOFTWAREGLN A:205 , LYS A:212 , TRP A:251 , HOH A:456binding site for residue GOL A 302

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:69 -A:238

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:166 -Leu A:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UJ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UJ4)

(-) Exons   (0, 0)

(no "Exon" information available for 5UJ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhhh......ee..hhhhh.....hhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeee......eeeeeeee......eeeeeeee........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uj4 A  23 HMLTNLVAEPFAKLEQDFGGSIGVYAMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVIAAAARLALEGLGV 292
                                    32        42        52    ||  63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       254       264       274       284        
                                                             57|                                                                                                                                                                                              252|                                      
                                                              59                                                                                                                                                                                               254
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UJ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UJ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UJ4)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  5uj4
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  BLKPC_KLEPN | Q9F663
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  3.5.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLKPC_KLEPN | Q9F663: 2ov5 3e2k 3e2l 3rxw 3rxx 4zbe 5eec 5uj3 5ul8

(-) Related Entries Specified in the PDB File

5uj3 5ul8