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(-) Description

Title :  IFIT1 N216A MONOMERIC MUTANT (L457E/L464E) WITH M7GPPP-AAAA (ANTI CONFORMATION OF CAP)
 
Authors :  Y. M. Abbas, S. Martinez-Montero, M. J. Damha, B. Nagar
Date :  27 Dec 16  (Deposition) - 01 Mar 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mrna Cap, N7-Methylguanosine-Triphosphate Rna, Tetratricopeptide Repeat, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. M. Abbas, B. T. Laudenbach, S. Martinez-Montero, R. Cencic, M. Habjan, A. Pichlmair, M. J. Damha, J. Pelletier, B. Nagar
Structure Of Human Ifit1 With Capped Rna Reveals Adaptable Mrna Binding And Mechanisms For Sensing N1 And N2 Ribose 2'-O Methylations.
Proc. Natl. Acad. Sci. V. 114 E2106 2017 U. S. A.
PubMed-ID: 28251928  |  Reference-DOI: 10.1073/PNAS.1612444114

(-) Compounds

Molecule 1 - INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: IFIT1, G10P1, IFI56, IFNAI1, ISG56
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IFIT-1,INTERFERON-INDUCED 56 KDA PROTEIN,P56
 
Molecule 2 - RNA (5'-D(*(GTA))-R(P*AP*AP*A)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2GTA1Mod. NucleotideP1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
3PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:63 , HOH A:665 , HOH A:843binding site for residue PGE A 501
2AC2SOFTWAREASP A:47 , HOH A:624 , HOH A:734binding site for residue CA A 502
3AC3SOFTWAREGLU A:77 , HOH A:837 , HOH A:846 , HOH A:887binding site for residue CA A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UDL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UDL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UDL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UDL)

(-) Exons   (0, 0)

(no "Exon" information available for 5UDL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5udl A   8 HQVKDSLEQLRCHFTWELSIDDDEMPDLENRVLDQIEFLDTKYSVGIHNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRMECPEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDAGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQMIQIKEATKGQPRGQNREKLDKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEETMQDIHFHYGRFQEFQKKSDVNAIIHYLKAIKIEQASLTRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKLEGNMNEAEEYYERAERLA 467
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467


Chain B from PDB  Type:DNA/RNA  Length:4
                                    
                 5udl B   1 xAAA   4
                            |   
                            1-GTA
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UDL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UDL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UDL)

(-) Gene Ontology  (20, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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  IFIT1_HUMAN | P09914
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IFIT1_HUMAN | P09914: 4hou 5udi 5udj 5udk 5w5i

(-) Related Entries Specified in the PDB File

5udi 5udj 5udk