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(-) Description

Title :  THE CRYSTAL STRUCTURE OF TP0737 FROM TREPONEMA PALLIDUM
 
Authors :  C. A. Brautigam, R. K. Deka, D. R. Tomchick, M. V. Norgard
Date :  30 Nov 16  (Deposition) - 22 Feb 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A
Keywords :  Abc Transporter, Ligand-Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Brautigam, R. K. Deka, W. Z. Liu, D. R. Tomchick, M. V. Norgard
Functional Clues From The Crystal Structure Of An Orphan Periplasmic Ligand-Binding Protein From Treponema Pallidum.
Protein Sci. V. 26 847 2017
PubMed-ID: 28168761  |  Reference-DOI: 10.1002/PRO.3133

(-) Compounds

Molecule 1 - SUGAR ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 28-436
    Gene: A8P32_03680
    Organism Common: SYPHILIS TREPONEME
    Organism Scientific: TREPONEMA PALLIDUM SUBSP. PALLIDUM
    Organism Taxid: 161

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
2CL2Ligand/IonCHLORIDE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:198 , TYR A:241 , ALA A:404 , HOH A:627binding site for residue BR A 501
2AC2SOFTWAREVAL A:259 , ARG A:260 , HOH A:775binding site for residue CL A 502
3AC3SOFTWAREASP A:115 , HIS A:253binding site for residue CL A 503
4AC4SOFTWARESER A:146 , ASN A:148 , ALA A:383 , ASP A:385 , HOH A:612binding site for residue EDO A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5U2P)

(-) Cis Peptide Bonds  (3, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:101 -Pro A:102
2Phe A:196 -Pro A:197
3Asp A:409 -Pro A:410

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U2P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U2P)

(-) Exons   (0, 0)

(no "Exon" information available for 5U2P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhh.......hhhhh.............ee.....eeeeeeeehhhhhhh......hhhhhhhhhhhhhhh.eeee........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhh...eeeeeeehhhhhhhhhhh....eeee...........eeee...eeeee.....hhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh.eee.hhhhhhhh.......hhhhhh.....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u2p A  40 VRLSVLIREKHYSSGLQNVFTKLELEEGIAVTVETIQDDQYPTVLHARLADGTAPDVVEVSLPSLHALDPYLYFVDLSKEAWIPDLLIPPTDPYGKTFALPLNCAVSINALFYNKDLFDRYGISEPKSWNELLESCALIVKSIVPLALSTTESFPHTLLADAITKVLGEQGARDLVKRATDDSIDWTHERALYPVLGAYLELFKRGYVNKHHRTARVREIIHDFTRDRIAMYFGSHLVADAIIKERPGINLGACVLPITENAQDVLTGSLEVQGLAVHKKSARVATACRALSVLASAAYQNSFFEEHKGLPAFRNTTSAVIPACLSALFKSHIEKGKVIQAIDAYAQAQNTASVFPDFAAYVTDPAPTAHTMLHRAQTEAR 426
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179 ||    192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392||     405       415       425 
                                                                                                                                                                       181|                                                                                                                                                                                                             393|                             
                                                                                                                                                                        185                                                                                                                                                                                                              397
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U2P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U2P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U2P)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5U2P)

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 Related Entries

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