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(-) Description

Title :  2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF GLUTATHIONE REDUCTASE FROM VIBRIO PARAHAEMOLYTICUS IN COMPLEX WITH FAD.
 
Authors :  G. Minasov, L. Shuvalova, A. Cardona-Correa, I. Dubrovska, S. Grimsha W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  28 Nov 16  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Glutathione Reductase, Fad, Lipid-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, L. Shuvalova, A. Cardona-Correa, I. Dubrovska, S. Grimshaw, K. Kwon, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 3 Angstrom Resolution Crystal Structure Of Glutathione Reductase From Vibrio Parahaemolyticus In Complex With Fad.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE REDUCTASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VP0068
    Organism Taxid: 223926
    Strain: RIMD 2210633

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:15 , GLY A:17 , SER A:18 , GLY A:19 , ILE A:37 , GLU A:38 , ALA A:39 , GLY A:44 , THR A:45 , CYS A:46 , VAL A:49 , GLY A:50 , CYS A:51 , LYS A:54 , GLY A:117 , PHE A:118 , ALA A:119 , ALA A:142 , VAL A:143 , GLY A:144 , TYR A:181 , ILE A:182 , ARG A:267 , ILE A:274 , GLY A:306 , ASP A:307 , GLU A:314 , LEU A:315 , THR A:316 , PRO A:317 , HOH A:651 , HOH A:655 , HOH A:656 , HOH A:693 , HOH A:735 , HIS B:444 , PRO B:445binding site for residue FAD A 501
2AC2SOFTWARESER A:378 , GLY A:379 , GLU A:450binding site for residue SO4 A 502
3AC3SOFTWAREHIS A:444 , PRO A:445 , GLY B:15 , GLY B:17 , SER B:18 , GLY B:19 , GLU B:38 , ALA B:39 , GLY B:44 , THR B:45 , CYS B:46 , GLY B:50 , CYS B:51 , LYS B:54 , GLY B:117 , PHE B:118 , ALA B:119 , ALA B:142 , VAL B:143 , GLY B:144 , TYR B:181 , ILE B:182 , ARG B:267 , ILE B:274 , GLY B:306 , ASP B:307 , GLU B:314 , LEU B:315 , THR B:316 , PRO B:317 , HOH B:655 , HOH B:669 , HOH B:671 , HOH B:694 , HOH B:715 , HOH B:716binding site for residue FAD B 501
4AC4SOFTWARESER B:378 , GLY B:379 , GLU B:450 , HOH B:739binding site for residue SO4 B 502
5AC5SOFTWAREGLY C:15 , GLY C:17 , SER C:18 , GLY C:19 , GLU C:38 , ALA C:39 , ASP C:41 , GLY C:44 , THR C:45 , CYS C:46 , VAL C:49 , GLY C:50 , CYS C:51 , LYS C:54 , GLY C:117 , PHE C:118 , ALA C:119 , ALA C:142 , VAL C:143 , GLY C:144 , TYR C:181 , ILE C:182 , ARG C:267 , ILE C:274 , GLY C:306 , ASP C:307 , GLU C:314 , LEU C:315 , THR C:316 , PRO C:317 , HOH C:623 , HOH C:625 , HOH C:640 , HOH C:652 , HOH C:664 , HOH C:683 , HIS D:444 , PRO D:445binding site for residue FAD C 501
6AC6SOFTWARESER C:378 , GLY C:379 , GLU C:450binding site for residue SO4 C 502
7AC7SOFTWAREHIS C:444 , PRO C:445 , GLY D:15 , GLY D:17 , SER D:18 , GLY D:19 , ILE D:37 , GLU D:38 , ALA D:39 , ASP D:41 , GLY D:44 , THR D:45 , CYS D:46 , VAL D:49 , GLY D:50 , CYS D:51 , LYS D:54 , GLY D:117 , PHE D:118 , ALA D:119 , ALA D:142 , VAL D:143 , GLY D:144 , TYR D:181 , ILE D:182 , ARG D:267 , ILE D:274 , GLY D:306 , ASP D:307 , GLU D:314 , LEU D:315 , THR D:316 , PRO D:317 , HOH D:614 , HOH D:654 , HOH D:660 , HOH D:669 , HOH D:705binding site for residue FAD D 501
8AC8SOFTWARELEU D:343binding site for residue CL D 502
9AC9SOFTWARESER D:378 , GLY D:379 , GLU D:450 , HOH D:615 , HOH D:742binding site for residue SO4 D 503

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:46 -A:51
2B:46 -B:51
3C:46 -C:51
4D:46 -D:51

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1His A:351 -Pro A:352
2His A:444 -Pro A:445
3His B:351 -Pro B:352
4His B:444 -Pro B:445
5His C:351 -Pro C:352
6His C:444 -Pro C:445
7His D:351 -Pro D:352
8His D:444 -Pro D:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U1O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U1O)

(-) Exons   (0, 0)

(no "Exon" information available for 5U1O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..eeee..eeeeeeeeee...eee......hhhhh.hhhhhhhh.....eeeee..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhh......................eee..........hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5u1o A   6 ATHFDYICIGGGSGGIASANRAAMYGAKVALIEAQDLGGTCVNVGCVPKKVMWHGAQIAEAMNLYAEDYGFDVDVKGFDWSKLVESRQAYIGRIHQSYDRVLGNNKVNVIKGFAKFVDEKTVEVNGEHYTADHILIAVGGRPTIPNIPGAEYGIDSNGFFDLAEQPKRVAVVGAGYIAVEIAGVLHALGTETHLFVRKESPLRSFDPMIIDTLVEVMEAEGPTLHTHSVPKEVVKEADGSLTLHLENGESQNVDQLIWAIGRHPATDAINLASTGVATNEKGYIKVDEYQETNVKGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKPNAKMDYDLVPTVVFSHPPIGTIGLTTQEAEEKYGKDNIKVYTSGFTAMYTAVTKHRQPCKMKLVCAGEEETVVGLHGIGFTVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTMR 455
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455


Chain B from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..eeee..eeee...eee...eee......hhhhheehhhhhh......eeeee..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhh......................eee..........hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u1o B   5 MATHFDYICIGGGSGGIASANRAAMYGAKVALIEAQDLGGTCVNVGCVPKKVMWHGAQIAEAMNLYAEDYGFDVDVKGFDWSKLVESRQAYIGRIHQSYDRVLGNNKVNVIKGFAKFVDEKTVEVNGEHYTADHILIAVGGRPTIPNIPGAEYGIDSNGFFDLAEQPKRVAVVGAGYIAVEIAGVLHALGTETHLFVRKESPLRSFDPMIIDTLVEVMEAEGPTLHTHSVPKEVVKEADGSLTLHLENGESQNVDQLIWAIGRHPATDAINLASTGVATNEKGYIKVDEYQETNVKGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKPNAKMDYDLVPTVVFSHPPIGTIGLTTQEAEEKYGKDNIKVYTSGFTAMYTAVTKHRQPCKMKLVCAGEEETVVGLHGIGFTVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTMR 455
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 


Chain C from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..eeee..eeeeeeeeee...eee......hhhhh.hhhhhhhh.....eeeee..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhh......................eee..........hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u1o C   5 MATHFDYICIGGGSGGIASANRAAMYGAKVALIEAQDLGGTCVNVGCVPKKVMWHGAQIAEAMNLYAEDYGFDVDVKGFDWSKLVESRQAYIGRIHQSYDRVLGNNKVNVIKGFAKFVDEKTVEVNGEHYTADHILIAVGGRPTIPNIPGAEYGIDSNGFFDLAEQPKRVAVVGAGYIAVEIAGVLHALGTETHLFVRKESPLRSFDPMIIDTLVEVMEAEGPTLHTHSVPKEVVKEADGSLTLHLENGESQNVDQLIWAIGRHPATDAINLASTGVATNEKGYIKVDEYQETNVKGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKPNAKMDYDLVPTVVFSHPPIGTIGLTTQEAEEKYGKDNIKVYTSGFTAMYTAVTKHRQPCKMKLVCAGEEETVVGLHGIGFTVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTMR 455
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 


Chain D from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeeee..eeee..eeeeeeeeee...eee......hhhhh.hhhhhhhh.....eeeee..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhh......................eee..........hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhh......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5u1o D   6 ATHFDYICIGGGSGGIASANRAAMYGAKVALIEAQDLGGTCVNVGCVPKKVMWHGAQIAEAMNLYAEDYGFDVDVKGFDWSKLVESRQAYIGRIHQSYDRVLGNNKVNVIKGFAKFVDEKTVEVNGEHYTADHILIAVGGRPTIPNIPGAEYGIDSNGFFDLAEQPKRVAVVGAGYIAVEIAGVLHALGTETHLFVRKESPLRSFDPMIIDTLVEVMEAEGPTLHTHSVPKEVVKEADGSLTLHLENGESQNVDQLIWAIGRHPATDAINLASTGVATNEKGYIKVDEYQETNVKGIYCVGDIMEGGIELTPVAVKAGRQLSERLFNNKPNAKMDYDLVPTVVFSHPPIGTIGLTTQEAEEKYGKDNIKVYTSGFTAMYTAVTKHRQPCKMKLVCAGEEETVVGLHGIGFTVDEMIQGFGVAMKMGATKADFDSVVAIHPTGSEEFVTMR 455
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U1O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U1O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U1O)

(-) Gene Ontology  (10, 10)

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