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(-) Description

Title :  CRYOEM RECONSTRUCTION OF HUMAN IKK1, OPEN CONFORMATION 1
 
Authors :  D. Lyumkis, G. Ghosh, S. Polley, T. Biswath, D. Huang, D. O. Passos
Date :  24 Oct 16  (Deposition) - 09 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Conserved Helix-Loop-Helix, Transcription, Oncogene, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Polley, D. O. Passos, D. B. Huang, M. C. Mulero, A. Mazumder, T. Biswas, I. M. Verma, D. Lyumkis, G. Ghosh
Structural Basis For The Activation Of Ikk1/ Alpha.
Cell Rep V. 17 1907 2016
PubMed-ID: 27851956  |  Reference-DOI: 10.1016/J.CELREP.2016.10.067

(-) Compounds

Molecule 1 - INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT ALPHA
    ChainsA, B
    EC Number2.7.11.10
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFASTBACHTA
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypePLASMID
    GeneCHUK, IKKA, TCF16
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIKAPPAB KINASE, CONSERVED HELIX-LOOP-HELIX UBIQUITOUS KINASE, I-KAPPA-B KINASE 1, IKK1, NUCLEAR FACTOR NF-KAPPA-B INHIBITOR KINASE ALPHA, NFKBIKA, TRANSCRIPTION FACTOR 16, TCF-16

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TQW)

(-) Sites  (0, 0)

(no "Site" information available for 5TQW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TQW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TQW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TQW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TQW)

(-) Exons   (0, 0)

(no "Exon" information available for 5TQW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:564
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....ee....eeeeeee.....eeee...hhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhh.eehhhhh.ee.......hhhhhh.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhh.......eeee.....eeee.........hhhhhhhhhhhhhhhh..hhhhh..........hhhhhhhhhhh...eeeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeee.............eeeee...........hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tqw A  14 PWEMRERLGTGGFGNVCLYQHRELDLKIAIKSLSTKNRERWCHEIQIMKKLRKLLNKPENCCGLKESQILSLLSDIGSGIRYLHENKIIHRDLKPENIVLQDVGGKIIHKIILQYLAPELFENKPYTATVDYWSFGTMVFECIAGYRPFLHHLQPFTWHEKIKKKDPKCIFACEEMSGEVRFSSHLPQPNSLCSLIVEPMENWLQLMLNWDPQQRGGPVDLTLKQPRCFVLMDHILNLKIVHILNMTSAKIISFLLPPDESLHSLQSRIERETGINTGSQELLSETGISLDPRKPMVYLFDKSKTVYEGRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMKNTLISASQQLKAKLEFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDLYKQLKHRPSDHSYSDSTEMVKIIVHTVQSQDRVLKELFGHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIACTQ 660
                                    23        33        43 ||     57        67|      112       122       132       142       152       162 ||    192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362    || 387       401       411       421       431       441       451       461       471       481       491       501       511       521|      536       546       556       566       576       586       596       606       616       626       636       646       656    
                                                          45|               67|                                                          164|                                                                                                                                                                                   367|          396|                                                                                                                     521|                                                                                                                                     
                                                           50               103                                                           185                                                                                                                                                                                    383           401                                                                                                                      527                                                                                                                                     

Chain B from PDB  Type:PROTEIN  Length:564
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....ee....eeeeeee.....eeee...hhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhh.eehhhhh.ee.......hhhhhh.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhh.......eeee.....eeee.........hhhhhhhhhhhhhhhh..hhhhh..........hhhhhhhhhhh...eeeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeee.............eeeee...........hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tqw B  14 PWEMRERLGTGGFGNVCLYQHRELDLKIAIKSLSTKNRERWCHEIQIMKKLRKLLNKPENCCGLKESQILSLLSDIGSGIRYLHENKIIHRDLKPENIVLQDVGGKIIHKIILQYLAPELFENKPYTATVDYWSFGTMVFECIAGYRPFLHHLQPFTWHEKIKKKDPKCIFACEEMSGEVRFSSHLPQPNSLCSLIVEPMENWLQLMLNWDPQQRGGPVDLTLKQPRCFVLMDHILNLKIVHILNMTSAKIISFLLPPDESLHSLQSRIERETGINTGSQELLSETGISLDPRKPMVYLFDKSKTVYEGRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMKNTLISASQQLKAKLEFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDLYKQLKHRPSDHSYSDSTEMVKIIVHTVQSQDRVLKELFGHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIACTQ 660
                                    23        33        43 ||     57        67|      112       122       132       142       152       162 ||    192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362    || 387       401       411       421       431       441       451       461       471       481       491       501       511       521|      536       546       556       566       576       586       596       606       616       626       636       646       656    
                                                          45|               67|                                                          164|                                                                                                                                                                                   367|          396|                                                                                                                     521|                                                                                                                                     
                                                           50               103                                                           185                                                                                                                                                                                    383           401                                                                                                                      527                                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TQW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TQW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TQW)

(-) Gene Ontology  (50, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IKKA_HUMAN | O151113brt 5ebz 5tqx 5tqy

(-) Related Entries Specified in the PDB File

5tqx 5tqy