5TPV - JenaLib

Title :   X-RAY STRUCTURE OF WLARA (TDP-FUCOSE-3,4-KETOISOMERASE) FROM CAMPYLOBACTER JEJUNI

Authors :   H. M. Holden, J. B. Thoden, Z. A. Li, A. S. Riegert, M. -F. Goneau, A. M. Cun E. Vinograd, I. C. Schoenhofen, M. Gilbert, J. Li

Date :   21 Oct 16 (Deposition) - 01 Feb 17 (Release) - 12 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.14

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Ketoisomerase, Lipooligosaccharide, Deoxy-Sugar, Unusual Sugar, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Z. Li, A. S. Riegert, M. F. Goneau, A. M. Cunningham, E. Vinogradov, J. Li, I. C. Schoenhofen, J. B. Thoden, H. M. Holden, M. Gilbert
Characterization Of The Dtdp-Fuc3N And Dtdp-Qui3N Biosynthetic Pathways In Campylobacter Jejuni 81116.
Glycobiology V. 27 358 2017
PubMed-ID: 28096310 | Reference-DOI: 10.1093/GLYCOB/CWW136

Compounds

Molecule 1 - WLARA, TDP-FUCOSE-3,4-KETOISOMERASE
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA2(DE3)
	Expression System Taxid	:	562
	Gene	:	WLARA
	Organism Scientific	:	CAMPYLOBACTER JEJUNI SUBSP. JEJUNI 81116
	Organism Taxid	:	407148
	Strain	:	81116

Structural Features

Chains, Units

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 5)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION
2	TYD	3	Ligand/Ion	THYMIDINE-5'-DIPHOSPHATE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION
2	TYD	2	Ligand/Ion	THYMIDINE-5'-DIPHOSPHATE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	-1	Ligand/Ion	PHOSPHATE ION
2	TYD	2	Ligand/Ion	THYMIDINE-5'-DIPHOSPHATE

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:33 , ARG A:46 , GLY A:47 , HIS A:49 , TYR A:114 , TYR A:119 , HOH A:330 , HOH A:344 , ILE B:11 , LYS B:14 , LEU B:18 , VAL B:20	binding site for residue TYD A 201
2	AC2	SOFTWARE	ILE A:11 , LYS A:14 , LEU A:18 , VAL A:20 , HOH A:309 , ARG B:33 , ARG B:46 , GLY B:47 , HIS B:49 , TYR B:114 , TYR B:119 , TYR B:121 , HOH B:339 , HOH B:345	binding site for residue TYD B 201
3	AC3	SOFTWARE	GLN B:96	binding site for residue PO4 B 202
4	AC4	SOFTWARE	TYR B:123	binding site for residue PO4 B 203
5	AC5	SOFTWARE	LYS A:117 , LEU C:18 , VAL C:20 , ARG C:33 , HIS C:49 , TYR C:114 , TYR C:119 , TYR C:121	binding site for residue TYD C 201

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eee..eeeeeee..........eeeeee......eeeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tpv A   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKNNIVW 135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain B from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...eee..eeeeee...........eeeeee.......eeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tpv B   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKNNIVWRGG 138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain C from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee....ee..............eeeee........eeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tpv C   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKN 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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