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(-) Description

Title :  X-RAY STRUCTURE OF WLARA (TDP-FUCOSE-3,4-KETOISOMERASE) FROM CAMPYLOBACTER JEJUNI
 
Authors :  H. M. Holden, J. B. Thoden, Z. A. Li, A. S. Riegert, M. -F. Goneau, A. M. Cun E. Vinograd, I. C. Schoenhofen, M. Gilbert, J. Li
Date :  21 Oct 16  (Deposition) - 01 Feb 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Ketoisomerase, Lipooligosaccharide, Deoxy-Sugar, Unusual Sugar, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Z. Li, A. S. Riegert, M. F. Goneau, A. M. Cunningham, E. Vinogradov, J. Li, I. C. Schoenhofen, J. B. Thoden, H. M. Holden, M. Gilbert
Characterization Of The Dtdp-Fuc3N And Dtdp-Qui3N Biosynthetic Pathways In Campylobacter Jejuni 81116.
Glycobiology V. 27 358 2017
PubMed-ID: 28096310  |  Reference-DOI: 10.1093/GLYCOB/CWW136

(-) Compounds

Molecule 1 - WLARA, TDP-FUCOSE-3,4-KETOISOMERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 562
    Gene: WLARA
    Organism Scientific: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI 81116
    Organism Taxid: 407148
    Strain: 81116

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
2TYD3Ligand/IonTHYMIDINE-5'-DIPHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
2TYD2Ligand/IonTHYMIDINE-5'-DIPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PO4-1Ligand/IonPHOSPHATE ION
2TYD2Ligand/IonTHYMIDINE-5'-DIPHOSPHATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:33 , ARG A:46 , GLY A:47 , HIS A:49 , TYR A:114 , TYR A:119 , HOH A:330 , HOH A:344 , ILE B:11 , LYS B:14 , LEU B:18 , VAL B:20binding site for residue TYD A 201
2AC2SOFTWAREILE A:11 , LYS A:14 , LEU A:18 , VAL A:20 , HOH A:309 , ARG B:33 , ARG B:46 , GLY B:47 , HIS B:49 , TYR B:114 , TYR B:119 , TYR B:121 , HOH B:339 , HOH B:345binding site for residue TYD B 201
3AC3SOFTWAREGLN B:96binding site for residue PO4 B 202
4AC4SOFTWARETYR B:123binding site for residue PO4 B 203
5AC5SOFTWARELYS A:117 , LEU C:18 , VAL C:20 , ARG C:33 , HIS C:49 , TYR C:114 , TYR C:119 , TYR C:121binding site for residue TYD C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TPV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TPV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TPV)

(-) Exons   (0, 0)

(no "Exon" information available for 5TPV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eee..eeeeeee..........eeeeee......eeeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tpv A   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKNNIVW 135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     


Chain B from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee...eee..eeeeee...........eeeeee.......eeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5tpv B   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKNNIVWRGG 138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        


Chain C from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee....ee..............eeeee........eeeeee....eeeeeee..eeeeee....eeeeee....eeeee....eeeee......eeeeee....hhh.ee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tpv C   1 MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLDDSIRGDHANLNSEFIFIALNGSCEILIDDGKTKQKIILNNKTKGLYIDKMIWKQMYNFSKDCILLVLTNTYYDEKEYIYDYKYFCELKN 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TPV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TPV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TPV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5TPV)

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