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(-) Description

Title :  TOLUENE 4-MONOOXYGENASE (T4MOHD) BOUND TO PRODUCT AFTER TURNOVER IN CRYSTAL
 
Authors :  J. F. Acheson, B. G. Fox
Date :  19 Sep 16  (Deposition) - 22 Mar 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym. Unit :  A,B,C,E
Biol. Unit 1:  A,B,C,E  (2x)
Keywords :  Diiron, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. F. Acheson, L. J. Bailey, T. C. Brunold, B. G. Fox
In-Crystal Reaction Cycle Of A Toluene-Bound Diiron Hydroxylase.
Nature V. 544 191 2017
PubMed-ID: 28346937  |  Reference-DOI: 10.1038/NATURE21681

(-) Compounds

Molecule 1 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN A
    Chains: A
    EC Number: 1.14.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 RILP
    Expression System Taxid: 511693
    Fragment: RESIDUES 1-493
    Gene: TMOA
    Organism Scientific: PSEUDOMONAS MENDOCINA
    Organism Taxid: 300
    Synonym: TOLUENE-4-MONOOXYGENASE HYDROXYLASE SUBUNIT,T4MOH
 
Molecule 2 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN E
    Chains: B
    EC Number: 1.14.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 RILP
    Expression System Taxid: 511693
    Fragment: RESIDUES 1-308
    Gene: TMOE
    Organism Scientific: PSEUDOMONAS MENDOCINA
    Organism Taxid: 300
    Synonym: T4MOE
 
Molecule 3 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN B
    Chains: C
    EC Number: 1.14.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 RILP
    Expression System Taxid: 511693
    Gene: TMOB
    Organism Scientific: PSEUDOMONAS MENDOCINA
    Organism Taxid: 300
    Synonym: T4MOB
 
Molecule 4 - TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D
    Chains: E
    EC Number: 1.14.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 RILP
    Expression System Taxid: 511693
    Gene: TMOD
    Organism Scientific: PSEUDOMONAS MENDOCINA
    Organism Taxid: 300
    Synonym: T4MO EFFECTOR PROTEIN D,T4MOD,TOLUENE-4-MONOOXYGENASE EFFECTOR PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCE
Biological Unit 1 (2x): ABCE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1FE2Ligand/IonFE (III) ION
2PCR1Ligand/IonP-CRESOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2PCR2Ligand/IonP-CRESOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:104 , GLU A:134 , HIS A:137 , FE A:502 , PCR A:503 , HOH A:621 , HOH A:661binding site for residue FE A 501
2AC2SOFTWAREGLU A:134 , GLU A:197 , GLU A:231 , HIS A:234 , FE A:501 , PCR A:503 , HOH A:621binding site for residue FE A 502
3AC3SOFTWAREGLU A:104 , ALA A:107 , GLU A:134 , PHE A:176 , GLU A:197 , GLU A:231 , FE A:501 , FE A:502 , HOH A:621binding site for residue PCR A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TDU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:460 -Pro A:461

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TDU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TDU)

(-) Exons   (0, 0)

(no "Exon" information available for 5TDU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.........hhhhhhhhhhhh....hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhh..................hhhhh....eeeee..eeeee.hhhhhhhhhhhhhhhh...hhhhhhhh......hhhhhhhhh...hhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tdu A   2 AMHPRKDWYELTRATNWTPSYVTEEQLFPERMSGHMGIPLEKWESYDEPYKTSYPEYVSIQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAYHSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSYHMGVWYWRTTAWWNPAAGVTPEERDWLEEKYPGWNKRWGRCWDVITENVLNDRMDLVSPETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADK 491
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491


Chain B from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhh..hhhhh...........hhhhhhhhhhh........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tdu B   2 SFESKKPMRTWSHLAEMRKKPSEYDIVSRKLHYSTNNPDSPWELSPDSPMNLWYKQYRNASPLKHDNWDAFTDPDQLVYRTYNLMQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSMLSS 306
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     


Chain C from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeeeee...hhhhhhhhhhhh............eeeee...........hhhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 5tdu C   2 SAFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFEE  84
                                    11        21        31        41        51        61        71        81   


Chain E from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh..eeeeeee...hhhhhhhhhhhhh.....eeee...eeeeeee.eeeeehhhhhhhhh...hhhhhhh.eeeee.eeee...eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 5tdu E   2 STLADQALHNNNVGPIIRAGDLVEPVIETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQLGRPFNMQELEINLASFAGQIQADEDQIRFYFDKTM 103
                                    11        21        31        41        51        61        71        81        91       101
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TDU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TDU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TDU)

(-) Gene Ontology  (8, 25)

Asymmetric Unit(hide GO term definitions)

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  5tdu
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TMOA_PSEME | Q00456: 3dhg 3dhh 3dhi 3ge3 3ge8 3i5j 3i63 3q14 3q2a 3q3m 3q3n 3q3o 3ri7 3rmk 4p1b 4p1c 5tds 5tdt 5tdv
        TMOB_PSEME | Q00457: 3dhg 3dhh 3dhi 3ge3 3ge8 3i5j 3i63 3q14 3q2a 3q3m 3q3n 3q3o 3ri7 3rmk 4p1b 4p1c 5tds 5tdt 5tdv
        TMOD_PSEME | Q00459: 1g10 1g11 2bf2 2bf3 2bf5 3dhh 3dhi 3ge3 3ge8 3i5j 3i63 3q14 3q2a 3q3m 3q3n 3q3o 3ri7 5tdt 5tdv
        TMOE_PSEME | Q00460: 3dhg 3dhh 3dhi 3ge3 3ge8 3i5j 3i63 3q14 3q2a 3q3m 3q3n 3q3o 3ri7 3rmk 4p1b 4p1c 5tds 5tdt 5tdv

(-) Related Entries Specified in the PDB File

5tds 5tdt 5tdv