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(-) Description

Title :  ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE HIV INTEGRASE GENE; HARBORS 47 POINT MUTATIONS RELATIVE TO WILD-TYPE I-ONUI
 
Authors :  B. L. Stoddard, R. Werther, A. R. Lambert
Date :  07 Sep 16  (Deposition) - 03 May 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Meganuclease, Engineered Protein, Dna Complex, Homing Endonuclease, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Stoddard
Tbd
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - I-ONUI_E-VHIVINT_V2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
 
Molecule 2 - DNA (26-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (26-MER)
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:22 , GLY A:177 , HOH A:566 , HOH A:619 , DA B:17 , DT C:15binding site for residue CA A 401
2AC2SOFTWAREALA A:21 , GLU A:178 , HOH A:540 , DC B:16 , HOH B:145 , DA C:16binding site for residue CA A 402
3AC3SOFTWAREGLU A:22 , GLY A:177 , GLU A:178 , DC B:16 , DA B:17 , DT C:15 , DA C:16binding site for residue CA A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T8D)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:229 -Ser A:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T8D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T8D)

(-) Exons   (0, 0)

(no "Exon" information available for 5T8D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhheeeeeeeee....eeeeeeeeeeee..hhhhhhhhhhhhh..eeeee...eeeeee.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh................hhhhhhhhhhhheeeeeeee........eeeeeeeeeee..hhhhhhhhhhhhh..eeeee......eeeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t8d A   7 ASSINPWILTGFADAEGSFGLYIINRNIRYTTRLKFTITLHNKDKSILENIQSTWKVGIIANNGDNAVSLIVTRFEDLKVIIDHFEKYPLITQKLGDYKLFKQAFSVMENKEHLKENGIKELVRIKAKMNWGLTDELKKAFPGNISRERPLINKNIPNFKWLAGFTSGEGHFGVELIKNSRNSRVHVRLRFEIAQHVRDKNLMNSLITYLGCGYIYEQNYSERSWLRFSVSKFSDINDKIIPVFQENTLIGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGR 301
                                    16        26      ||39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299  
                                                     33|                                                                                                                                                                                                                                                                        
                                                      37                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:DNA  Length:26
                                                          
                 5t8d B   1 GGGAATGGCAGTATTCATCCACAATG  26
                                    10        20      


Chain C from PDB  Type:DNA  Length:26
                                                          
                 5t8d C   1 CCATTGTGGATGAATACTGCCATTCC  26
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T8D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T8D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T8D)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5T8D)

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  Cis Peptide Bonds
    Tyr A:229 - Ser A:230   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

5v0q