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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A NOVEL ALDO-KETO REDUCTASES FOR THE BIOCATALYTIC CONVERSION OF 3-HYDROXYBUTANAL TO 1,3-BUTANEDIOL
 
Authors :  J. S. Brunzelle, Z. Wawrzak, E. Evdokimova, M. Kudritska, A. Savchenko A. F. Yakunin, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  02 Sep 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (8x)
Keywords :  Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Nadp- Dependent Oxidoreductase, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kim, R. Flick, J. Brunzelle, A. Singer, E. Evdokimova, G. Brown, J. C. Joo, G. A. Minasov, W. F. Anderson, R. Mahadevan, A. Savchenko, A. F. Yakunin
Structural And Biochemical Studies Of Novel Aldo-Keto Reductases For The Biocatalytic Conversion Of 3-Hydroxybutanal To 1, 3-Butanediol.
Appl. Environ. Microbiol. 2017
PubMed-ID: 28130301  |  Reference-DOI: 10.1128/AEM.03172-16

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE, OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TVLIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: STM2406
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NDP8Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO416Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:201 , ARG A:287 , ASN A:288 , CYS A:321 , HOH A:504 , HOH A:516 , HOH A:671 , HOH A:733binding site for residue SO4 A 401
2AC2SOFTWAREPRO A:145 , LEU A:146 , HOH A:550 , HOH A:551 , HOH A:615 , HOH A:650 , HOH A:667binding site for residue SO4 A 402
3AC3SOFTWAREARG A:89 , GLU A:130 , TYR A:131binding site for residue CL A 403
4AC4SOFTWAREGLY A:31 , LEU A:32 , TRP A:33 , ASP A:61 , TYR A:66 , HIS A:138 , SER A:168 , ASN A:169 , GLN A:193 , PHE A:221 , SER A:222 , PRO A:223 , LEU A:224 , GLY A:226 , GLY A:227 , THR A:230 , ARG A:232 , SER A:278 , LEU A:295 , ILE A:296 , GLY A:297 , SER A:299 , GLN A:303 , ASP A:306 , HOH A:507 , HOH A:569 , HOH A:575 , HOH A:587 , HOH A:597 , HOH A:707 , HOH A:753binding site for residue NDP A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T79)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:67 -Pro A:68
2Pro A:68 -Pro A:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T79)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T79)

(-) Exons   (0, 0)

(no "Exon" information available for 5T79)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh.eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhhh.eeee...hhhhh............hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t79 A   1 MIYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVENSRALLQRAFDLGITHFDLANNYGPPPGSAECNFGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDILEDLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGSIAFSPLAGGQLTDRYLLKPEQITADKLEKVRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAILEG 330
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                                                                                                                                                                                                                                                                   234|                                                                                
                                                                                                                                                                                                                                                                    250
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T79)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T79)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5T79)

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  5t79
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 Related Entries

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UniProtKB/TrEMBL
        Q8ZNA1_SALTY | Q8ZNA1: 3erp

(-) Related Entries Specified in the PDB File

3erp RELATED ID: CSGID-IDP01002 RELATED DB: TARGETTRACK