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(-) Description

Title :  PLP AND GABA TRIGGER GABR-MEDIATED TRANSCRIPTION REGULATION IN BACILLUS SUBSIDIES VIA EXTERNAL ALDIMINE FORMATION
 
Authors :  R. Wu, R. Sanishvili, B. R. Belitsky, J. I. Juncosa, H. V. Le, H. J. S. Lehr M. Farley, R. B. Silverman, G. A. Petsko, D. Ringe, D. Liu
Date :  29 Aug 16  (Deposition) - 29 Mar 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gabr, Mocr, Plp, Gaba, External Aldimine, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Wu, R. Sanishvili, B. R. Belitsky, J. I. Juncosa, H. V. Le, H. J. Lehrer, M. Farley, R. B. Silverman, G. A. Petsko, D. Ringe, D. Liu
Plp And Gaba Trigger Gabr-Mediated Transcription Regulation In Bacillus Subtilis Via External Aldimine Formation.
Proc. Natl. Acad. Sci. V. 114 3891 2017 U. S. A.
PubMed-ID: 28348215  |  Reference-DOI: 10.1073/PNAS.1703019114

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: EBO DOMAIN (UNP RESIDUES 107-471)
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
176U1Ligand/Ion(4S)-5-FLUORO-4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]PENTANOIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
176U2Ligand/Ion(4S)-5-FLUORO-4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]PENTANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:114 , MET A:115 , GLY A:180 , THR A:181 , TYR A:205 , ARG A:207 , PHE A:250 , ASP A:279 , TYR A:281 , THR A:309 , SER A:311 , ARG A:319 , SER A:321 , ARG A:430 , PHE A:431 , HOH A:611 , HOH A:614 , HOH A:689binding site for residue 76U A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T4K)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ile A:177 -Gly A:178
2Glu A:202 -Pro A:203
3Phe A:250 -Pro A:251

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T4K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T4K)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee...........hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhh.ee...hhhhhhhhhhhhh.....eeee...hhhhhhhhhhh...eeee.ee..eehhhhhhhhh..eeee............hhhhhhhhhhhhhh....eeeee..............hhhhhh....eeeeee.....hhhhh.eeee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee......eeeeee....hhhhhhhhhhhh.ee.ee.hhhh......eeeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5t4k A 107 SDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYATLGDMSHPQGIYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAMEEPGYRRMYQLLKNAGKQVKTIMLDEKGMSIAEITRQQPDVLVTTPSHQFPSGTIMPVSRRIQLLNWAAEEPARYIIEDDYDSEFTYDVESIPALQSLDRFQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYKQRGYDLQTCSSLTQLTLQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAGLHFVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKTGRPTLIIGFARLKEEDIQEGVQRLFKAVYGH 471
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       441       451       461       471
                                                                                                                                                                                                                                                                                                                                                                 434|                               
                                                                                                                                                                                                                                                                                                                                                                  440
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T4K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T4K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T4K)

(-) Gene Ontology  (9, 9)

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 Related Entries

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UniProtKB/Swiss-Prot
        GABR_BACSU | P94426: 4mgr 4n0b 4tv7 5t4j 5x03

(-) Related Entries Specified in the PDB File

5t4l