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(-) Description

Title :  ATOMIC RESOLUTION STRUCTURE OF REDUCED E. COLI YAJL
 
Authors :  M. A. Wilson, J. Lin
Date :  10 Aug 16  (Deposition) - 28 Dec 16  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.98
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dj-1/Pfpi Superfamily Nucleophile Elbow, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Lin, E. Pozharski, M. A. Wilson
Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons.
Biochemistry V. 56 391 2017
PubMed-ID: 27989121  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00906

(-) Compounds

Molecule 1 - CHAPERONE YAJL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: THIJ, ACU57_11870, AM266_04520, ERS085365_02411, ERS085416_01937, ERS139211_01908, ERS150873_01827, PU15_11320, PU38_04800, SK85_00449
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: DJ-1 FAMILY PROTEIN,OXIDATIVE-STRESS-RESISTANCE CHAPERONE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:308 , HOH A:414 , HOH A:468 , HOH A:481 , HOH A:492 , HOH A:500binding site for residue MG A 201
2AC2SOFTWAREHOH B:332 , HOH B:372 , HOH B:373 , HOH B:487 , HOH B:490 , HOH B:516binding site for residue MG B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5SY4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5SY4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5SY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5SY4)

(-) Exons   (0, 0)

(no "Exon" information available for 5SY4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh..eeeeee.......eee.....eee..eehhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhh.............hhhhhhhh.........eeee....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5sy4 A   2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE 196
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhhhhh..eeeeee.......eee.....eee..eehhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh..............hhhhhhhh.........eeee....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5sy4 B   2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE 196
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5SY4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5SY4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5SY4)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  YAJL_ECOLI | Q46948
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YAJL_ECOLI | Q46948: 2ab0

(-) Related Entries Specified in the PDB File

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