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(-) Description

Title :  SCYTALONE DEHYDRATASE PLUS INHIBITOR 2
 
Authors :  Z. Wawrzak, T. Sandalova, J. J. Steffens, G. S. Basarab, T. Lundqvist, Y. Lindqvist, D. B. Jordan
Date :  10 Feb 99  (Deposition) - 29 Dec 99  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (4x)
Biol. Unit 3:  A,B,C  (2x)
Biol. Unit 4:  A,B,C  (2x)
Biol. Unit 5:  A,B,C  (2x)
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Wawrzak, T. Sandalova, J. J. Steffens, G. S. Basarab, T. Lundqvist, Y. Lindqvist, D. B. Jordan
High-Resolution Structures Of Scytalone Dehydratase-Inhibitor Complexes Crystallized At Physiological Ph.
Proteins V. 35 425 1999

(-) Compounds

Molecule 1 - SCYTALONE DEHYDRATASE
    Chains: A, B, C
    EC Number: 4.2.1.94
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MAGNAPORTHE GRISEA
    Organism Taxid: 148305
    Synonym: SDH

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (4x): ABC
Biological Unit 3 (2x): ABC
Biological Unit 4 (2x): ABC
Biological Unit 5 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2UNN3Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNN3Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNN12Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNN6Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNN6Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2UNN6Ligand/Ion(6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:163 , ASP A:164 , GLU A:167BINDING SITE FOR RESIDUE CA A 501
2AC2SOFTWAREGLU B:163 , ASP B:164BINDING SITE FOR RESIDUE CA B 502
3AC3SOFTWAREARG C:51 , ASP C:55 , GLU C:59 , HOH C:731BINDING SITE FOR RESIDUE CA C 503
4AC4SOFTWARETYR A:50 , PHE A:53 , MET A:69 , VAL A:75 , LEU A:106 , VAL A:108 , HIS A:110 , ALA A:127 , SER A:129 , ASN A:131 , LEU A:147 , ILE A:151 , PHE A:158 , HOH A:537 , HOH A:538BINDING SITE FOR RESIDUE UNN A 175
5AC5SOFTWARETYR B:50 , PHE B:53 , MET B:69 , VAL B:70 , VAL B:75 , LEU B:106 , VAL B:108 , HIS B:110 , ALA B:127 , SER B:129 , ASN B:131 , LEU B:147 , ILE B:151 , HOH B:599 , HOH B:601BINDING SITE FOR RESIDUE UNN B 173
6AC6SOFTWAREPHE C:53 , MET C:69 , VAL C:75 , LEU C:106 , VAL C:108 , HIS C:110 , ALA C:127 , SER C:129 , ASN C:131 , PRO C:149 , ILE C:151 , HOH C:619 , HOH C:620BINDING SITE FOR RESIDUE UNN C 174

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5STD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5STD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5STD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5STD)

(-) Exons   (0, 0)

(no "Exon" information available for 5STD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d5stda_ A: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 5stdA00 A:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.....eeee.....eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee.eeeeeeeeeee.hhhh.hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5std A   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168    


Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d5stdb_ B: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 5stdB00 B:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhh........eee.....eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee.eeeeeeeeeee.hhh..hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5std B   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168    


Chain C from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d5stdc_ C: Scytalone dehydratase                                                                                                                                     SCOP domains
               CATH domains 5stdC00 C:9-172  [code=3.10.450.50, no name defined]                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhh........eee.....eee....hhhhhhhh..........eeeeeee..eeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeeeeeeeee..eeee.eeeeeeeeeee.hhh..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5std C   9 GEITFSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRIDYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIRWGEFDFDRIFEDGRETFGDK 172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5STD)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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