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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RIF1 N-TERMINAL DOMAIN (RIF1-NTD) FROM SACCHAROMYCES CEREVISIAE
 
Authors :  R. D. Bunker, T. Shi, N. H. Thoma
Date :  04 May 17  (Deposition) - 14 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Telomere Maintenance, Dna Double-Strand Break Repair, Irregular Helical Repeat, All-Alpha Fold, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Mattarocci, J. K. Reinert, R. D. Bunker, G. A. Fontana, T. Shi, D. Klein, S. Cavadini, M. Faty, M. Shyian, L. Hafner, D. Shore, N. H. Thoma, U. Rass
Rif1 Maintains Telomeres And Mediates Dna Repair By Encasin Dna Ends.
Nat. Struct. Mol. Biol. 2017
PubMed-ID: 28604726  |  Reference-DOI: 10.1038/NSMB.3420

(-) Compounds

Molecule 1 - TELOMERE LENGTH REGULATOR PROTEIN RIF1
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE (BTI-TN-5B1-4)
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Gene: RIF1, YBR275C, YBR1743
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RAP1-INTERACTING FACTOR 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 22)
No.NameCountTypeFull Name
1MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 44)
No.NameCountTypeFull Name
1MSE44Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5NVR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NVR)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:203 -Leu A:204
2Ser A:702 -Ser A:703
3Leu A:704 -Pro A:705
4Pro A:997 -Arg A:998

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NVR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NVR)

(-) Exons   (0, 0)

(no "Exon" information available for 5NVR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1072
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhhhhh..hhhhhhhhhhhh....hhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhh.....hhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhh....hhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5nvr A  185 ETRVNPRALEYWVSGEIHGLVDNESVSEFKEIIEGGLGILRQESEDYVARRFEVYATFNNIIPILTTKNVNEVDQKFNILIVNIESIIEICIPHLQIAQDTLLSSSEKKNPFVIRLYVQIVRFFSAImSNFKIVKWLTKRPDLVNKLKVIYRWTTGALRNENSNKIIITAQVSFLRDEKFGTFFLSNEEIKPIISTFTEImEINSHNLIYEKLLLIRGFLSKYPKLmIETVTSWLPGEVLPRIIIGDEIYSmKILITSIVVLLELLKKCLDFVDEHERIYQCImLSPVCETIPEKFLSKLPLNSYDSANLDKVTIGHLLTQQIKNYIVVKNDNKIAmDLWLSmTGLLYDSGKRVYDLTSESNKVWFDLNNLCFINNHPKTRLmSIKVWRIITYCICTKISQKNQEGNKSLLSLLRTPFQmTLPYVNDPSAREGIIYHLLGVVYTAFTSNKNLSTDmFELFWDHLITPIYEDYVFKYDSIHLQNVLFTVLHLLIGGKNADVIHPmSVIASEGVKLKDISSLPPQIIKREYDKImKVVFQAVEVAISNVNLAHDLILTSLKHLPEDRKDQTHLESFSSLILKVTQNNKDTPIFRDFFGAVTSSFVYTFLDLFLRKNDSSLVNFNIQISKVGISQGNmTLDLLKDVIRKARNETSEFLIIEKFLELDDKKTEVYAQNWVGSTLLPPNISFREFQSLANIVNKVPNENSIENFLDLCLKLSFPVNLFTLLHVSmWSNNNFIYFIQSYVSKNENKLNVDLITLLKTSLPGNPELFSGLLPFLRRNKFmDILEYCIHSNPNLLNSIPDLNSDLLLKLLPRSRASYFAANIKLFKCSEQLTLVRWLLKGQQLEQLNQNFSEIENVLQNASDSELEKSEIIRELLHLAmANPIEPLFSGLLNFCIKNNmADHLDEFCGNmTSEVLFKISPELLLKLLTYKEKPNGKLLAAVIEKIENGDDDYILELLEKIIIQKEIQILEKLKEPLLVFFLNPVSSNmQKHKKSTNmLRELVLLYLTKPLSRSAAKKFFSmLISILPPNPNYQTIDmVNLLIDLIKSHNATLKTIGKWIQESGVVHQGDS 1256
                                   194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384|      394       404      |414       424       434 |     444       454       464   |   474       484       494       504       514      |524  |    534       544       554       564  |    574       584       594       604       614       624       634     | 644       654       664       674       684   |   694       704       714  |    724       734       744       754       764       774       784       794       804       814    |  824       834       844       854       864       874       884       894       904       914       924       934       944       954       964  |    974       984       994      1004      1014      1024      1034      1044      1054      1064|     1074      1084|     1094 |    1104      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204  |   1214      1224      1234      1244      1254  
                                                                                                                                                         312-MSE                                                                  385-MSE                   411-MSE                  436-MSE                         468-MSE                                              521-MSE |                                     567-MSE                              604-MSE                             640-MSE                                         688-MSE                      717-MSE                                                                                               819-MSE                                                                                        914-MSE                                              967-MSE                                                                                          1065-MSE            1085-MSE   1096-MSE                                                                      1174-MSE 1183-MSE                1207-MSE        1223-MSE                             
                                                                                                                                                                                                                                                                                                                                                                                527-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NVR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NVR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NVR)

(-) Gene Ontology  (13, 13)

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  Cis Peptide Bonds
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    Leu A:704 - Pro A:705   [ RasMol ]  
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 Related Entries

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        RIF1_YEAST | P29539: 4bjs 4bjt 5nw5

(-) Related Entries Specified in the PDB File

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