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(-) Description

Title :  THE ENDO-BETA1,6-GLUCANASE BT3312
 
Authors :  A. Basle, M. Temple, F. Cuskin, E. Lowe, H. Gilbert
Date :  17 Mar 17  (Deposition) - 10 May 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Glycoside Hydrolase; Endo-Beta1, 6-Clucanase; Beta-1, 6-Glucan; Bacteroides; Human Gut Microbiota; Yeast Glycan, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Temple, F. Cuskin, A. Basle, N. Hickey, G. Speciale, S. J. Williams, H. J. Gilbert, E. C. Lowe
A Bacteroidetes Locus Dedicated To Fungal 1, 6-Beta-Glucan Degradation: Unique Substrate Conformation Drives Specificity Of The Key Endo-1, 6-Beta-Glucanase.
J. Biol. Chem. V. 292 10639 2017
PubMed-ID: 28461332  |  Reference-DOI: 10.1074/JBC.M117.787606

(-) Compounds

Molecule 1 - GLUCOSYLCERAMIDASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ERS852430_01553
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818
    Synonym: BT3312

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1BGC3Ligand/IonBETA-D-GLUCOSE
2NA2Ligand/IonSODIUM ION
3NOJ3Ligand/Ion1-DEOXYNOJIRIMYCIN
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION
3NOJ1Ligand/Ion1-DEOXYNOJIRIMYCIN
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION
3NOJ1Ligand/Ion1-DEOXYNOJIRIMYCIN
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2NA-1Ligand/IonSODIUM ION
3NOJ1Ligand/Ion1-DEOXYNOJIRIMYCIN

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:281 , ASN B:282 , TYR B:285 , ASP B:286binding site for residue NA B 503
2AC2SOFTWAREASP B:82 , TYR B:122 , TYR B:231 , TYR B:277binding site for residue NA B 504
3AC3SOFTWAREASP A:131 , PHE A:132 , TRP A:179 , ASN A:237 , GLU A:238 , ASN A:244 , TYR A:316 , GLU A:339 , TRP A:345 , TRP A:377 , CYS A:393 , HOH A:667 , HOH A:691 , HOH A:719 , HOH A:757binding site for Poly-Saccharide residues NOJ A 501 through BGC A 502
4AC4SOFTWAREASP B:131 , PHE B:132 , TRP B:179 , ASN B:237 , GLU B:238 , ASN B:244 , TYR B:316 , GLU B:339 , SER B:341 , TRP B:345 , TRP B:377 , CYS B:393 , HOH B:611 , HOH B:625 , HOH B:640 , HOH B:644 , HOH B:686 , HOH B:714 , HOH B:773binding site for Poly-Saccharide residues NOJ B 501 through BGC B 502
5AC5SOFTWAREASP C:131 , PHE C:132 , TRP C:179 , ASN C:237 , GLU C:238 , ASN C:244 , TYR C:316 , GLU C:339 , SER C:341 , TRP C:345 , TRP C:377 , CYS C:393binding site for Poly-Saccharide residues NOJ C 501 through BGC C 502

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:393 -A:396
2B:393 -B:396
3C:393 -C:396

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:386 -Pro A:387
2Gly B:386 -Pro B:387
3Gly C:386 -Pro C:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NGL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NGL)

(-) Exons   (0, 0)

(no "Exon" information available for 5NGL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.......eeeee....eeeeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhh.ee...............ee...hhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhh...eeeeee..ee.hhh..hhhhhhhhhhhhhhhhhhh....eeeeee.eee.............ee..eee.......eeehhhhhhhhhhhh......eeeeeee.....eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ngl A  37 GDVAIYTTTSSLTRDLTRDAVNFSTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAK 494
                                    46        56   ||   74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494
                                                  60|                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                   69                                                                                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......eeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhh.ee...............ee...hhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhh...eeeeee..ee.hhh..hhhhhhhhhhhhhhhhhhh....eeeeee.eee.............ee..eee.......eeehhhhhhhhhhhh......eeeeeee.....eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ngl B  36 TGDVAIYTTTSSLTRDLTRDAVNFSPTTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAKS 495
                                    45        55     || 71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491    
                                                    61|                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                     68                                                                                                                                                                                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:452
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......eeeee....eeeeeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhee.......ee........hhhhhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhh...eeeeee..ee.hhh..hhhhhhhhhhhhhhhhhhh..eeeeeeee.eee.............ee..eee.......eeehhhhhhhhhhhh......eeeeeee.....eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ngl C  37 GDVAIYTTTSSLTRDLTRDAVNFSTTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAKS 495
                                    46        56   ||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493  
                                                  60|                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                   68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NGL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NGL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NGL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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