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(-) Description

Title :  THE ENDO-BETA1,6-GLUCANASE BT3312
 
Authors :  A. Basle, M. Temple, F. Cuskin, E. Lowe, H. Gilbert
Date :  17 Mar 17  (Deposition) - 10 May 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Glycoside Hydrolase, Endo-Beta1, 6-Clucanase, Beta-1, 6-Glucan, Bacteroides, Human Gut Microbiota, Yeast Glycan, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Temple, F. Cuskin, A. Basle, N. Hickey, G. Speciale, S. J. Williams, H. J. Gilbert, E. C. Lowe
A Bacteroidetes Locus Dedicated To Fungal 1, 6-Beta-Glucan Degradation: Unique Substrate Conformation Drives Specificity Of The Key Endo-1, 6-Beta-Glucanase.
J. Biol. Chem. V. 292 10639 2017
PubMed-ID: 28461332  |  Reference-DOI: 10.1074/JBC.M117.787606

(-) Compounds

Molecule 1 - GLUCOSYLCERAMIDASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ERS852430_01553
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818
    Synonym: BT3312

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5NGK)

(-) Sites  (0, 0)

(no "Site" information available for 5NGK)

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:393 -A:396
2B:393 -B:396
3C:393 -C:396

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:386 -Pro A:387
2Gly B:386 -Pro B:387
3Gly C:386 -Pro C:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NGK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NGK)

(-) Exons   (0, 0)

(no "Exon" information available for 5NGK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......eeeee.........eeeeeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhh.ee...............ee...hhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhh...eeeeee..ee.hhh..hhhhhhhhhhhhhhhhhhh....eeeeee.eee.............ee..eee.......eeehhhhhhhhhhhh......eeeeeee.....eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ngk A  36 TGDVAIYTTTSSLTRDLTRDAVNFSPKLAPTTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAKS 495
                                    45        55      ||67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487        
                                                     62|                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                      65                                                                                                                                                                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeee.....eeeeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhh.ee...............ee...hhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhh...eeeeee..ee.hhh..hhhhhhhhhhhhhhhhhhh....eeeeee.eee.............ee..eee.......eeehhhhhhhhhhhh......eeeeeee.....eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ngk B  35 PTGDVAIYTTTSSLTRDLTRDAVNFSPTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAKSK 496
                                    44        54      ||71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491     
                                                     61|                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                      69                                                                                                                                                                                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.......eeeee.....eeeeeeeeeeee.eeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee................hhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...hhh.ee...............ee...hhhhhhhhhhhhhhhhhhh.....ee.................hhhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhh...eeeeee...hhhhh..hhhhhhhhhhhhhhhhhhh....eeeeee.eee.................eee.......eeehhhhhhhhhhhh.....eeeeeee......eeeeeee....eeeeeeee.....eeeeee....eeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ngk C  35 PTGDVAIYTTTSSLTRDLTRDAVNFSPTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKGIENFALQSEEKDYILPILKEILAINPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEPLNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQKNYPGKIYEDAAASQYLAGAAYHNYGGNREELLNIHQAYPEKELLFTETSIGTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDVPGKSVTSYRWAKS 495
                                    44        54      ||71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491    
                                                     61|                                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                      69
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NGK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NGK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NGK)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Gly A:386 - Pro A:387   [ RasMol ]  
    Gly B:386 - Pro B:387   [ RasMol ]  
    Gly C:386 - Pro C:387   [ RasMol ]  
 
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