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Title :   CRYSTAL STRUCTURE OF OXA10 WITH HEPES

Authors :   J. Brem

Date :   12 Dec 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.88

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Antibiotic Resistance Oxacillinase Carbapenems, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. T. Lohans, D. Y. Wang, C. Jorgensen, S. T. Cahill, I. J. Clifton, M. A. Mcdonough, H. P. Oswin, J. Spencer, C. Domene, T. D. W. Claridge, J. Brem, C. J. Schofield
(13)C-Carbamylation As A Mechanistic Probe For The Inhibition Of Class D Beta-Lactamases By Avibactam And Halide Ions.
Org. Biomol. Chem. 2017
PubMed-ID: 28678295 | Reference-DOI: 10.1039/C7OB01514C

Molecule 1 - BETA-LACTAMASE OXA-10
	Chains	:	A, B
	EC Number	:	3.5.2.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	BLA, OXA10, PSE2
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	BETA-LACTAMASE PSE-2

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 11)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	CO3	1	Ligand/Ion	CARBONATE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6	GOL	4	Ligand/Ion	GLYCEROL
7	KCX	2	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID

Biological Unit 1 (5, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CO3	-1	Ligand/Ion	CARBONATE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6	GOL	4	Ligand/Ion	GLYCEROL
7	KCX	1	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CO3	1	Ligand/Ion	CARBONATE ION
3	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
5	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6	GOL	-1	Ligand/Ion	GLYCEROL
7	KCX	1	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:67 , MET A:99 , SER A:115 , GLU A:129 , THR A:206 , GLY A:207 , PHE A:208 , SER A:209 , ARG A:250 , HOH A:415 , HOH A:428 , HOH A:486	binding site for residue EPE A 301
2	AC2	SOFTWARE	THR A:107 , ARG A:109 , HOH A:524 , PRO B:198 , GLU B:199 , GLU B:227 , GLU B:229	binding site for residue DMS A 302
3	AC3	SOFTWARE	LYS A:138 , PHE A:139 , SER A:140 , GLU A:168 , SER A:172 , HOH A:500	binding site for residue GOL A 303
4	AC4	SOFTWARE	GLU A:79 , ARG A:131 , LYS A:134 , TYR A:135 , LYS A:152 , GLU A:156	binding site for residue GOL A 304
5	AC5	SOFTWARE	ALA A:98 , ILE A:146 , SER A:147 , GLY A:148 , GLY A:149 , ILE A:150 , HOH A:404 , HOH A:541	binding site for residue GOL A 305
6	AC6	SOFTWARE	ALA A:197 , PRO A:198 , GLU A:199 , TYR A:200 , GLU A:227 , GLU A:229 , THR B:107 , ARG B:109	binding site for residue GOL A 306
7	AC7	SOFTWARE	THR A:80 , ARG A:131 , HOH A:487	binding site for residue EDO A 307
8	AC8	SOFTWARE	ARG A:97 , ALA A:98 , PRO A:118 , HOH A:510 , HOH A:585	binding site for residue CL A 308
9	AC9	SOFTWARE	SER B:67 , SER B:115 , THR B:206 , ARG B:250	binding site for residue CO3 B 301

Asymmetric Unit

No.	Residues
1	A:44	-	A:51
2	B:44	-	B:51

(no "Cis Peptide Bond" information available for 5MMY)

(no "SAP(SNP)/Variant" information available for 5MMY)

(no "PROSITE Motif" information available for 5MMY)

(no "Exon" information available for 5MMY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhh....eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh........ee........hhhhh..eehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....................eehhhhhhhhhhhhh.....hhhhhhhhhhhheeeee..eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5mmy A  19 MGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFkIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGII 264
                                    28        38        48        58        68 |      78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258      
                                                                              70-KCX

Chain B from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhh....eeeeeee....eeee.hhhhhhhee.hhhhhhhhhhhhhhhh........ee........hhhhh..eehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....................eehhhhhhhhhhhhh.....hhhhhhhhhhhheeeee..eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mmy B  20 GSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFkIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGII 264
                                    29        39        49        59        69|       79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259     
                                                                             70-KCX

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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Description

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Ligands, Modified Residues, Ions (7, 11)

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SS Bonds (2, 2)

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