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(-) Description

Title :  CYANOTHECE LIPOXYGENASE 2 (CSPLOX2) VARIANT - L304F
 
Authors :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Date :  14 Nov 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Linoleate 11-Lipoxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Lipoxygenase 2 From Cyanothece Sp. Controls Dioxygen Insertion By Steric Shielding And Substrate Fixation.
Sci Rep V. 7 2069 2017
PubMed-ID: 28522865  |  Reference-DOI: 10.1038/S41598-017-02153-W

(-) Compounds

Molecule 1 - ARACHIDONATE 15-LIPOXYGENASE
    Chains: A, B
    EC Number: 1.13.11.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 3- 610
    Gene: PCC8801_3106
    Mutation: YES
    Organism Scientific: CYANOTHECE SP. (STRAIN PCC 8801)
    Organism Taxid: 41431

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2FE2Ligand/IonFE (III) ION
3GOL4Ligand/IonGLYCEROL
4IMD5Ligand/IonIMIDAZOLE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:257 , HIS A:262 , HIS A:449 , ASN A:453 , ILE A:569 , HOH A:1225binding site for residue FE A 1001
02AC2SOFTWARETHR A:68 , LEU A:69 , SER A:71 , ILE A:73 , THR B:68 , LEU B:69 , SER B:71 , ILE B:73 , GOL B:1003binding site for residue GOL A 1002
03AC3SOFTWAREGLY A:172 , ARG A:173 , ASP A:312 , THR A:318 , LEU A:319 , HOH A:1117 , HOH A:1157binding site for residue GOL A 1003
04AC4SOFTWAREARG A:57 , GLN A:303 , TYR A:310 , HOH A:1122 , HOH A:1141binding site for residue IMD A 1004
05AC5SOFTWARETYR A:510 , SER A:561 , ASN A:562binding site for residue IMD A 1005
06AC6SOFTWARELYS A:141 , THR A:230binding site for residue CL A 1006
07AC7SOFTWAREHIS B:257 , HIS B:262 , HIS B:449 , ASN B:453 , ILE B:569 , HOH B:1174binding site for residue FE B 1001
08AC8SOFTWAREGLY B:172 , ARG B:173 , ASP B:312 , THR B:318 , LEU B:319 , HOH B:1135 , HOH B:1209binding site for residue GOL B 1002
09AC9SOFTWAREGLU A:74 , GOL A:1002 , ASN B:72 , GLU B:74binding site for residue GOL B 1003
10AD1SOFTWARETYR B:510 , SER B:561 , ASN B:562binding site for residue IMD B 1004
11AD2SOFTWAREARG B:57 , GLN B:303 , TYR B:310 , HOH B:1101 , HOH B:1179binding site for residue IMD B 1005
12AD3SOFTWARETHR A:420 , GLY A:421 , VAL A:423 , SER A:424binding site for residue IMD B 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MEF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MEF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MEF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MEF)

(-) Exons   (0, 0)

(no "Exon" information available for 5MEF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:569
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhh.......hhhhh...hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeee....eeeee......eeeeeee.........eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mef A   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGFGDYRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQFISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560         


Chain B from PDB  Type:PROTEIN  Length:566
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh..............hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeeee..eeeeee......eeeeeee......eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mef B   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGYRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQFISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563      
                                                                                                                                                                                                                                   202|                                                                                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                    206
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MEF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MEF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MEF)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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