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(-) Description

Title :  CYANOTHECE LIPOXYGENASE 2 (CSPLOX2)
 
Authors :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Date :  14 Nov 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Linoleate 11-Lipoxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Lipoxygenase 2 From Cyanothece Sp. Controls Dioxygen Insertion By Steric Shielding And Substrate Fixation.
Sci Rep V. 7 2069 2017
PubMed-ID: 28522865  |  Reference-DOI: 10.1038/S41598-017-02153-W

(-) Compounds

Molecule 1 - ARACHIDONATE 15-LIPOXYGENASE
    Chains: A, B
    EC Number: 1.13.11.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-569
    Gene: PCC8801_3106
    Organism Scientific: CYANOTHECE SP. (STRAIN PCC 8801)
    Organism Taxid: 41431

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 19)

Asymmetric/Biological Unit (8, 19)
No.NameCountTypeFull Name
11BO1Ligand/Ion1-BUTANOL
2BU14Ligand/Ion1,4-BUTANEDIOL
3FE2Ligand/IonFE (III) ION
4GOL1Ligand/IonGLYCEROL
5HEZ1Ligand/IonHEXANE-1,6-DIOL
6PDO2Ligand/Ion1,3-PROPANDIOL
7PGR6Ligand/IonR-1,2-PROPANEDIOL
8POL2Ligand/IonN-PROPANOL

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:257 , HIS A:262 , HIS A:449 , ASN A:453 , ILE A:569 , HOH A:1165binding site for residue FE A 1001
02AC2SOFTWAREASN A:162 , TYR A:163 , LYS A:164 , GLY A:165 , CYS A:251 , BU1 A:1004 , HOH A:1280binding site for residue PGR A 1002
03AC3SOFTWAREPRO A:94 , TYR A:454 , CYS A:507 , HOH A:1110 , HOH A:1123 , HOH A:1432binding site for residue BU1 A 1003
04AC4SOFTWAREARG A:260 , ALA A:328 , ALA A:329 , GLU A:332 , PGR A:1002 , HOH A:1317binding site for residue BU1 A 1004
05AC5SOFTWAREPRO A:288 , GLN A:291 , PRO A:517 , ASP A:518 , HOH A:1103 , HOH A:1121 , HOH A:1199 , HOH A:1463binding site for residue GOL A 1005
06AC6SOFTWAREARG A:57 , HIS A:262 , ILE A:296 , LEU A:299 , ALA A:300 , GLN A:303 , LEU A:304 , THR A:505 , LEU A:506 , ILE A:569 , HOH A:1165 , HOH A:1225binding site for residue HEZ A 1006
07AC7SOFTWAREPRO A:395 , THR A:430 , ILE A:431 , GLU A:432binding site for residue POL A 1007
08AC8SOFTWAREHIS B:257 , HIS B:262 , HIS B:449 , ASN B:453 , ILE B:569 , HOH B:1167binding site for residue FE B 1001
09AC9SOFTWAREPRO B:94 , TYR B:457 , HOH B:1102 , HOH B:1110 , HOH B:1309binding site for residue 1BO B 1002
10AD1SOFTWAREASN A:425 , GLU A:427 , ASN A:429 , ARG B:103binding site for residue PGR B 1003
11AD2SOFTWAREARG B:57 , GLN B:303 , LEU B:304 , THR B:505 , LEU B:506 , POL B:1010 , HOH B:1200binding site for residue PGR B 1004
12AD3SOFTWAREALA B:341 , ARG B:344 , TRP B:377 , GLU B:381 , ALA B:436 , HOH B:1245binding site for residue PGR B 1005
13AD4SOFTWARETHR A:420 , VAL A:423 , HOH A:1302 , HOH A:1381 , PRO B:231binding site for residue PGR B 1006
14AD5SOFTWAREASN B:162 , TYR B:163 , LYS B:164 , GLY B:165 , HOH B:1169 , HOH B:1263binding site for residue BU1 B 1007
15AD6SOFTWAREGLU B:520 , PHE B:521 , GLN B:527 , LEU B:530 , GLN B:534 , HOH B:1196binding site for residue BU1 B 1008
16AD7SOFTWARETHR A:68 , LEU A:69 , SER A:71 , ILE A:73 , THR B:68 , LEU B:69 , SER B:71 , ILE B:73 , HOH B:1249 , HOH B:1300binding site for residue PGR B 1009
17AD8SOFTWAREHIS B:262 , ILE B:296 , LEU B:299 , ALA B:300 , ILE B:569 , PGR B:1004 , HOH B:1167binding site for residue POL B 1010
18AD9SOFTWAREGLN A:45 , SER A:46 , HOH A:1279 , HOH A:1410 , GLN B:45 , SER B:46 , HOH B:1117binding site for residue PDO B 1011
19AE1SOFTWAREILE B:330 , PRO B:414 , GLY B:417 , ARG B:418 , HOH B:1101 , HOH B:1355 , HOH B:1435binding site for residue PDO B 1012

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MED)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MED)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MED)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MED)

(-) Exons   (0, 0)

(no "Exon" information available for 5MED)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:569
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh..............hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeee....eeeee......eeeeeee.........eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5med A   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGFGDYRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQLISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560         


Chain B from PDB  Type:PROTEIN  Length:565
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh..............hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeee....eeeee......eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5med B   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQLISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
                                                                                                                                                                                                                                   202|                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                    207
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MED)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MED)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MED)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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