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(-) Description

Title :  STRUCTURE OF THE ALPHA-L-ARABINOFURANOSIDASE ARB93A FROM FUSARIUM GRAMINEARUM IN COMPLEX WITH AN HYDROXIMOLACTONE INHIBITOR
 
Authors :  A. Varrot
Date :  11 Oct 16  (Deposition) - 28 Dec 16  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Arabinofuramisodase, Inhibitor, Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Coyle, A. W. Debowski, A. Varrot, K. A. Stubbs
Exploiting Sp(2) -Hybridisation In The Development Of Poten 1, 5-Alpha-L-Arabinanase Inhibitors.
Chembiochem V. 18 974 2017
PubMed-ID: 28266777  |  Reference-DOI: 10.1002/CBIC.201700073

(-) Compounds

Molecule 1 - EXO-1,5-ALPHA-L-ARABINOFURANOBIOSIDASE
    Chains: A
    EC Number: 3.2.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET30A
    Expression System Vector Type: PLASMID
    Gene: ARB93A
    Organism Common: WHEAT HEAD BLIGHT FUNGUS
    Organism Scientific: GIBBERELLA ZEAE
    Organism Taxid: 5518
    Other Details: THE DEPOSITED SEQUENCE IS FROM THE MATURE PROTEIN. OUR NUMBERING INCLUDE THE PEPTIDE SIGNAL AND IS SWITCHED BY 16 AMINO ACIDS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
16LW1Ligand/Ion(2~{Z},3~{R},4~{R},5~{S})-2-HYDROXYIMINO-5-(HYDROXYMETHYL)OXOLANE-3,4-DIOL
2AHR1Ligand/IonALPHA-L-ARABINOFURANOSE
3EDO1Ligand/Ion1,2-ETHANEDIOL
4GOL1Ligand/IonGLYCEROL
5MN4Ligand/IonMANGANESE (II) ION
6SO45Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:22 , LYS A:23 , THR A:24 , ARG A:374binding site for residue SO4 A 502
02AC2SOFTWAREGLY A:157 , GLU A:158 , LEU A:165 , THR A:166binding site for residue SO4 A 503
03AC3SOFTWARETHR A:35 , ASN A:219 , GLY A:364 , LYS A:365 , HOH A:604 , HOH A:646 , HOH A:687 , HOH A:713 , HOH A:739binding site for residue SO4 A 504
04AC4SOFTWARETHR A:175 , TYR A:176 , LYS A:177 , TYR A:237 , HOH A:601binding site for residue SO4 A 505
05AC5SOFTWAREGLU A:49 , LEU A:50 , SER A:51 , GLU A:106 , GLN A:345 , HOH A:620binding site for residue SO4 A 506
06AC6SOFTWAREASP A:32 , HOH A:632 , HOH A:653 , HOH A:662 , HOH A:739 , HOH A:834binding site for residue MN A 507
07AC7SOFTWAREASP A:32 , HOH A:644 , HOH A:647binding site for residue MN A 508
08AC8SOFTWAREGLU A:313 , ASP A:330binding site for residue MN A 509
09AC9SOFTWAREGLU A:377binding site for residue MN A 510
10AD1SOFTWAREARG A:311 , SER A:312 , GLU A:313 , THR A:335 , HOH A:664binding site for residue EDO A 511
11AD2SOFTWARELEU A:263 , HIS A:276 , HOH A:643 , HOH A:677 , HOH A:717binding site for residue GOL A 512
12AD3SOFTWAREGLU A:60 , GLN A:101 , PRO A:161 , TRP A:169 , GLU A:170 , GLN A:195 , ARG A:223 , GLY A:225 , MET A:226 , GLU A:242 , TYR A:337 , HOH A:658 , HOH A:666 , HOH A:667 , HOH A:673 , HOH A:674 , HOH A:718binding site for Poly-Saccharide residues 6LW A 500 through AHR A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M1Z)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:39 -Pro A:40
2Glu A:65 -Pro A:66
3Pro A:66 -Pro A:67
4Pro A:360 -Pro A:361

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M1Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M1Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5M1Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..........eeeeeeee.....eeeeeee.........eeeeee.......eeeeee........eeeeeeeee............eeeeeee.......eeeeeeee.......eeeeeeeee...........eeeeeeeee..eeeeeeee.........eeeeeee.........eeee.......eeeeeeeee.....eeeeeeee..............eeeeee...........ee.............eeeee.......eeeee......eeee........eeee..........eeee......eeeeee............eeeeeeehhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m1z A  22 GKTFSNVEIFDPPTNYRDPQVLYARPLELSDGTLLGTWENYSPEPPNVWFPIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKVVDDTKYANYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFPVYYRLSKDPQKFLNKAHHQIVSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGTRSEIFTNQALGDASAWKKWDVPQPTAYTRSLLTFQKDPDLLMIMGAGILPPAGGKNTVSASVVRLSEVMK 380
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M1Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M1Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M1Z)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        B8ZY56_GIBZA | B8ZY56: 2ydp 2ydt

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