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(-) Description

Title :  CRYOEM STRUCTURE OF THE MEMBRANE PORE COMPLEX OF PNEUMOLYSIN AT 4.5A
 
Authors :  K. Van Pee, A. Neuhaus, E. D'Imprima, D. J. Mills, W. Kuehlbrandt, O. Yi
Date :  24 Sep 16  (Deposition) - 05 Apr 17  (Release) - 05 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.50
Chains :  Asym./Biol. Unit :  B
Keywords :  Bacterial Toxins, Pore Complex, Cryoem Structure, Cholesterol- Dependent Cytolysin, Pneumolysin, Membrane Pore, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Van Pee, A. Neuhaus, E. D'Imprima, D. J. Mills, W. Kuhlbrandt, O. Yildiz
Cryoem Structures Of Membrane Pore And Prepore Complex Reveal Cytolytic Mechanism Of Pneumolysin.
Elife V. 6 2017
PubMed-ID: 28323617  |  Reference-DOI: 10.7554/ELIFE.23644

(-) Compounds

Molecule 1 - PNEUMOLYSIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: PLY, SPD_1726
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE SEROTYPE 2 (STRAIN D39 / NCTC 7466)
    Organism Taxid: 373153
    Synonym: THIOL-ACTIVATED CYTOLYSIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5LY6)

(-) Sites  (0, 0)

(no "Site" information available for 5LY6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LY6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala B:406 -His B:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LY6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LY6)

(-) Exons   (0, 0)

(no "Exon" information available for 5LY6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhh......eeee...........eeeeee..........hhhhhhhhh...............................eee....................hhhhhhhhhhhhhhhh.........eee..eeeeeeeeeeeeee..............eeeeeeeeeeeeeeeeeee...eee.................hhhhhh.......eee.....eeeeeeeeeeeeeeeeeeeeee........eeee....eeeeeeee........hhhhhhhh.....hhhh.................eeeee......eeee......eeeeee....eeeeeeee..eee..eeee.eee.....eee...............eeeeee.....eeeeeeeeee...........eee.......eeeeeeee.....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ly6 B   1 MANKAVNDFILAMNYDKKKLLTHQGESIENRFIKEGNQLPDEFVVIERKKRSLSTNTSDISVTATNDSRLYPGALLVVDETLLENNPTLLAVDRAPMTYSIDLPGLASSDSFLQVEDPSNSSVRGAVNDLLAKWHQDYGQVNNVPARMQYEKITAHSMEQLKVKFGSDFEKAANSLDIDFNAVHSGEKQIQIVNFKQIYYTVSVDAVKNPGDVFQDTVTVEDLKQRGISAERPLVYISSVAYGRQVYLKLETTSKSDEVQAAFEAAILGVKVAPQTQWKQILDNTEVKAVILGGDPSSGARVVTGKVDMVEDLIQEGSRFTADHPGLPISYTTSFLRDNVVATFQNSTDYVETKVTAYRNGDLLLDHSGAYVAQYYITWDELSYDHQGKEVLTPKAWDRNGQDLTAHFTTSIPLKGNVRNLSVKIRECTGLAWEWWRTVYEKTDLPLVRKRTISIWGTTLYPQVEDKVEND 471
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LY6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LY6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LY6)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala B:406 - His B:407   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TACY_STRP2 | Q04IN8: 4zgh 5aod 5aoe 5aof 5cr6 5cr8

(-) Related Entries Specified in the PDB File

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