5LQT - JenaLib

Title :   RNA DUPLEX HAS CENTRAL CONSECUTIVE GA PAIRS FLANKED BY G-C BASEPAIRS

Authors :   L. Huang, D. M. J. Lilley

Date :   17 Aug 16 (Deposition) - 21 Jun 17 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   N6-Methyladenine, Rna Folding, Watson-Crick Basepairs, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Huang, S. Ashraf, J. Wang, D. M. Lilley
Control Of Box C/D Snornp Assembly By N(6)-Methylation Of Adenine.
Embo Rep. 2017
PubMed-ID: 28623187 | Reference-DOI: 10.15252/EMBR.201743967

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G A:1 , CBV A:2 , C B:7	binding site for residue CA A 101
2	AC2	SOFTWARE	CBV A:2 , C A:3 , G A:4 , HOH A:228 , HOH B:207	binding site for residue NA A 102
3	AC3	SOFTWARE	HOH A:205 , HOH A:211 , HOH A:223 , HOH A:229 , HOH A:230 , HOH A:231	binding site for residue MG A 103
4	AC4	SOFTWARE	G A:5 , HOH A:208 , HOH A:224 , C B:10 , HOH B:213 , HOH B:214	binding site for residue MG B 101
5	AC5	SOFTWARE	G A:1 , G A:9 , C A:10 , HOH A:214 , C B:3 , C B:10 , HOH B:202 , HOH B:204 , HOH B:206 , HOH B:212 , HOH B:214	binding site for Di-nucleotide G B 1 and CBV B 2
6	AC6	SOFTWARE	G A:8 , G A:9 , C A:10 , HOH A:214 , G B:1 , G B:4 , HOH B:202 , HOH B:206 , HOH B:212 , HOH B:217	binding site for Di-nucleotide CBV B 2 and C B 3
7	AC7	SOFTWARE	G A:5 , 6MZ A:6 , C A:7 , G B:4 , C B:7 , HOH B:210 , HOH B:216	binding site for Di-nucleotide G B 5 and 6MZ B 6
8	AC8	SOFTWARE	G A:4 , G A:5 , 6MZ A:6 , C A:10 , CA A:101 , G B:5 , G B:8 , HOH B:210 , HOH B:211	binding site for Di-nucleotide 6MZ B 6 and C B 7

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:10
                                         
                  5lqt A  1 GxCGGxCGGC 10
                             |   |  10
                             |   |    
                             2-CBV    
                                 6-6MZ

Chain B from PDB  Type:RNA  Length:10
                                         
                  5lqt B  1 GxCGGxCGGC 10
                             |   |  10
                             2-CBV    
                                 6-6MZ

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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