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(-) Description

Title :  STRUCTURE OF THE ACTIVE TERNARY COMPLEX OF PIG HEART LACTATE DEHYDROGENASE WITH S-LAC-NAD AT 2.7 ANGSTROMS RESOLUTION
 
Authors :  U. M. Grau, M. G. Rossmann
Date :  29 Oct 80  (Deposition) - 04 Mar 81  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Oxidoreductase, Choh Donor, Nad Acceptr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. M. Grau, W. E. Trommer, M. G. Rossmann
Structure Of The Active Ternary Complex Of Pig Heart Lactat Dehydrogenase With S-Lac-Nad At 2. 7 A Resolution.
J. Mol. Biol. V. 151 289 1981
PubMed-ID: 7338899  |  Reference-DOI: 10.1016/0022-2836(81)90516-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LACTATE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.27
    Engineered: YES
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CIT2Ligand/IonCITRIC ACID
3LNC2Ligand/Ion(3S)-5-(3-CARBOXY-3-HYDROXYPROPYL) NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CIT4Ligand/IonCITRIC ACID
3LNC4Ligand/Ion(3S)-5-(3-CARBOXY-3-HYDROXYPROPYL) NICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:30 , GLN A:31 , VAL A:32 , ASP A:53 , LEU A:55 , LYS A:58 , THR A:97 , GLY A:99 , ARG A:101 , GLN A:102 , ARG A:109 , VAL A:138 , SER A:163 , LEU A:167 , ARG A:171 , HIS A:195 , ALA A:236 , THR A:246 , ILE A:250BINDING SITE FOR RESIDUE LNC A 332
2AC2SOFTWAREHIS A:188 , TRP A:190 , GLY A:209B , VAL A:209C , ILE A:268BINDING SITE FOR RESIDUE CIT A 333
3AC3SOFTWAREGLY B:30 , GLN B:31 , VAL B:32 , ASP B:53 , LEU B:55 , LYS B:58 , THR B:97 , GLY B:99 , ARG B:101 , GLN B:102 , ARG B:109 , VAL B:138 , SER B:163 , LEU B:167 , ARG B:171 , HIS B:195 , ALA B:236 , THR B:246 , ILE B:250BINDING SITE FOR RESIDUE LNC B 332
4AC4SOFTWAREHIS B:188 , TRP B:190 , GLY B:209B , VAL B:209C , ILE B:268BINDING SITE FOR RESIDUE CIT B 333

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LDH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LDH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LDH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LDH)

(-) Exons   (0, 0)

(no "Exon" information available for 5LDH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -d5ldha1 A:1-162 Lactate dehydrogenase                                                                                                                           d5ldha2 A:163-331 Lactate dehydrogenase                                                                                                                                       SCOP domains
               CATH domains -5ldhA01 A:1-164 NAD(P)-binding Rossmann-like Domain                                                                                                               5ldhA02 A:165-331 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee...hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhhh....ee.....hhhhh..eeee...............hhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhhh.........ee.......ee..........................hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..........................eeee..eeeee.............................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ldh A    0 xATLKEKLIAPVAQQETTIPDNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTLWGIQKDLKDL  331
                            |        9        19||      30        40        50        60        70        80||      91       101 ||    112       122      132A|      141       151       161       171       181       191       201      209C|||    217       227       237       247       257       267       277       287       297 ||    308       318       328 || 
                            |                  20|                                                         81|                 103|                       132A|                                                                         209A|||||                                                                                      299|                         330A| 
                            0-ACE               22                                                          83                  105                        132B                                                                          209B||||                                                                                       301                          330B 
                                                                                                                                                                                                                                          209C|||                                                                                                                         
                                                                                                                                                                                                                                           209D||                                                                                                                         
                                                                                                                                                                                                                                            210A|                                                                                                                         
                                                                                                                                                                                                                                             210B                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -d5ldhb1 B:1-162 Lactate dehydrogenase                                                                                                                           d5ldhb2 B:163-331 Lactate dehydrogenase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee...hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhhh....ee.....hhhhh..eeee...............hhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhhh.........ee.......ee..........................hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..........................eeee..eeeee.......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ldh B    0 xATLKEKLIAPVAQQETTIPDNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTLWGIQKDLKDL  331
                            |        9        19||      30        40        50        60        70        80||      91       101 ||    112       122      132A|      141       151       161       171       181       191       201      209C|||    217       227       237       247       257       267       277       287       297 ||    308       318       328 || 
                            |                  20|                                                         81|                 103|                       132A|                                                                         209A|||||                                                                                      299|                         330A| 
                            0-ACE               22                                                          83                  105                        132B                                                                          209B||||                                                                                       301                          330B 
                                                                                                                                                                                                                                          209C|||                                                                                                                         
                                                                                                                                                                                                                                           209D||                                                                                                                         
                                                                                                                                                                                                                                            210A|                                                                                                                         
                                                                                                                                                                                                                                             210B
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LDH)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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