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(-) Description

Title :  CRYO-EM STRUCTURE OF RECBCD+DNA COMPLEX REVEALING ACTIVATED NUCLEASE DOMAIN
 
Authors :  M. Wilkinson, Y. Chaban, D. B. Wigley
Date :  23 Jun 16  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.83
Chains :  Asym./Biol. Unit :  B,C,D,X
Keywords :  Helicase, Nuclease, Sh3, Homologous Recombination, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wilkinson, Y. Chaban, D. B. Wigley
Mechanism For Nuclease Regulation In Recbcd.
Elife V. 5 2016
PubMed-ID: 27644322  |  Reference-DOI: 10.7554/ELIFE.18227

(-) Compounds

Molecule 1 - RECBCD ENZYME SUBUNIT RECB,RECBCD ENZYME SUBUNIT RECB, RECBCD ENZYME SUBUNIT RECB
    Chains: B
    EC Number: 3.1.11.5, 3.1.11.5, 3.1.11.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RECB, IOR, RORA, B2820, JW2788
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Other Details: RESIDUES 913-932 MODELLED AS POLY-ALANINE IN MODEL TO REFLECT UNCERTAINTY OF THE EXACT POSITION OF THIS LOOP DUE TO WEAK DENSITY.
    Strain: K12
    Synonym: EXODEOXYRIBONUCLEASE V 135 KDA POLYPEPTIDE, EXODEOXYRIBONUCLEASE V BETA CHAIN,EXONUCLEASE V SUBUNIT RECB,EXOV SUBUNIT RECB,HELICASE/NUCLEASE RECBCD SUBUNIT RECB, EXODEOXYRIBONUCLEASE V 135 KDA POLYPEPTIDE,EXODEOXYRIBONUCLEASE V BETA CHAIN,EXONUCLEASE V SUBUNIT RECB,EXOV SUBUNIT RECB, HELICASE/NUCLEASE RECBCD SUBUNIT RECB,EXODEOXYRIBONUCLEASE V 135 KDA POLYPEPTIDE,EXODEOXYRIBONUCLEASE V BETA CHAIN,EXONUCLEASE V SUBUNIT RECB,EXOV SUBUNIT RECB,HELICASE/NUCLEASE RECBCD SUBUNIT RECB
 
Molecule 2 - RECBCD ENZYME SUBUNIT RECC
    Chains: C
    EC Number: 3.1.11.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RECC, B2822, JW2790
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: EXODEOXYRIBONUCLEASE V 125 KDA POLYPEPTIDE, EXODEOXYRIBONUCLEASE V GAMMA CHAIN,EXONUCLEASE V SUBUNIT RECC,EXOV SUBUNIT RECC
 
Molecule 3 - RECBCD ENZYME SUBUNIT RECD
    Chains: D
    EC Number: 3.1.11.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDFDUET
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RECD, HOPE, B2819, JW2787
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: EXODEOXYRIBONUCLEASE V 67 KDA POLYPEPTIDE, EXODEOXYRIBONUCLEASE V ALPHA CHAIN,EXONUCLEASE V SUBUNIT RECD,EXOV SUBUNIT RECD,HELICASE/NUCLEASE RECBCD SUBUNIT RECD
 
Molecule 4 - FORK-HAIRPIN DNA (70-MER)
    Chains: X
    Engineered: YES
    Organism Scientific: ENDOTHIA GYROSA
    Organism Taxid: 40263
    Other Details: HAIRPIN38-42 DUPLEX13-37&43-67 5'TAIL1-12 3'TAIL68-70
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : BCDX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION
3UNK20Mod. Amino Acid

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:26 , THR B:27 , GLY B:28 , LYS B:29 , THR B:30 , PHE B:31 , GLU B:385 , GLN B:417 , TRP B:447 , ARG B:448 , LYS B:483 , GLY B:746 , GLU B:748 , ARG B:808 , MG B:1502binding site for residue ANP B 1501
2AC2SOFTWARETHR B:30 , GLU B:385 , ANP B:1501binding site for residue MG B 1502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LD2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr C:685 -Pro C:686

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LD2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LD2)

(-) Exons   (0, 0)

(no "Exon" information available for 5LD2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:1151
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........eeeeee.....hhhhhhhhhhhhhhhh.hhhhh.....hhhhheee..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhh....eehhhhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhh....ee........hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh........hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhheehhhhhhhhhhhhhhh.hhhhhhhhhhhhh..eee......hhhhhhhhhhhhh.....eeeee.hhhhh.hhhhh.hhhhhhhhhhhh..eee..ee...hhhhhhhhhhhhh................ee......eeee........eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...........eeeee.hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..................eeeee.hhhh...eeeeee............eee......eee....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.............hhhhhhhhhhhhh.....hhhhhhhhhhhh....eeeee..................................eehhhhhh...............................hhhhhhhhhhhhhhh......hhhhhhhhhhhhh....hhhhhhhhhhhhhhhee....ee.hhh....eeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh........eeeeeeeeeeeeeee..eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhheeeeeeee............eeee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ld2 B    5 AETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFTPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRxxxxxxxxxxxxxxxxxxxxPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLAYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAG 1174
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284    || 308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908    |||918|||||||928|||||  943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173 
                                                                                                                                                                                                                                                                                                                      289|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              913-UNK||922-UNK||931-UNK                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                       304                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               914-UNK||923-UNK||932-UNK                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          915-UNK||924-UNK||938                                                                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           916-UNK| 925-UNK|                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            917-UNK  926-UNK                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             918-UNK  927-UNK                                                                                                                                                                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              919-UNK  928-UNK                                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               920-UNK  929-UNK                                                                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                921-UNK  930-UNK                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:1121
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhh........eeee..hhhhhhhhhhhhhhhhh.ee.ee..hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..........eeeee.....hhhhhhhhhhhh...eeeeeee....................................hhhhhh.............hhhhhhhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhh.........hhhhhhh....ee.......eeeeee.hhhhhhhhhhhhhhhhhhhh...hhh.eeeee.hhhhhhhhhhhhhhhh.......eee.......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......hhhhhhhh........hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh............eeeee........eeeeeee............................hhhhhhhhhhhhhhhheeeeeeeeee.ee....ee...hhhhhhhhhhhhhhee.......hhhhhhhhhhhhheee......hhhhhh..........hhhhhh...................eeehhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeeeeee...eeeee.....hhhhhhhhhhhhhhhhhh....eeeeee...eeeee...hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhee....ee..hhhhhhhhhhhhhhhhh..........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ld2 C    1 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQ 1121
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120 


Chain D from PDB  Type:PROTEIN  Length:605
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....eehhhhhhhh...hhhhhhh.......hhhhhhhhh..ee.......eee...eeeehhhhhhhhhhhhhhh........hhhhhhhhhhhhh......hhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeehhhhhh...................eeee.hhhhhhhhhhhhhhh......eeeeee............hhhhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhheeee.........hhhhhhhhhhh.hhhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh...............eee..............eeeeee....eeeeee.....eeee........ee..eee.hhhh...eeeeeee.........hhhhhhhhhhheeeeeeee.hhhhhhhhhhh......hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ld2 D    2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS  606
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601     


Chain X from PDB  Type:DNA  Length:51
                                                                                    
                5ld2 X    1 TTTTTTTTTTTTTCTAATGCGAGCACTGCTAGCAGTGCTCGCATTAGATTT   70
                                    10        20        30|       59        69 
                                                        30|                    
                                                         50
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LD2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LD2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LD2)

(-) Gene Ontology  (23, 61)

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 Related Entries

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        RECB_ECOLI | P08394: 1w36 3k70 5mbv
        RECC_ECOLI | P07648: 1w36 3k70 5mbv
        RECD_ECOLI | P04993: 1w36 3k70 5mbv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LD2)