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(-) Description

Title :  STRUCTURE OF THE GTPASE HETERODIMER OF CHLOROPLAST SRP54 AND FTSY FROM ARABIDOPSIS THALIANA
 
Authors :  G. Bange, J. Kribelbauer, K. Wild, I. Sinning
Date :  24 May 16  (Deposition) - 08 Jun 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Co-Translational Protein Targeting, Signal Recognition Particle, Gtpase, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Wild, G. Bange, D. Motiejunas, J. Kribelbauer, A. Hendricks, B. Segnitz, R. C. Wade, I. Sinning
Structural Basis For Conserved Regulation And Adaptation Of The Signal Recognition Particle Targeting Complex.
J. Mol. Biol. V. 428 2880 2016
PubMed-ID: 27241309  |  Reference-DOI: 10.1016/J.JMB.2016.05.015

(-) Compounds

Molecule 1 - SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTIC
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FFC, CPSRP54, AT5G03940, F8F6_150
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: CPSRP54,FFC
 
Molecule 2 - CELL DIVISION PROTEIN FTSY HOMOLOG, CHLOROPLASTIC
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CPFTSY, FTSY, AT2G45770, F4I18.25
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: CHLOROPLAST SRP RECEPTOR HOMOLOG,ALPHA SUBUNIT CPFTSY,FUSED SIGNAL RECOGNITION PARTICLE RECEPTOR

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1GCP4Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2GOL2Ligand/IonGLYCEROL
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GCP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1GCP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:185 , GLY A:186 , VAL A:187 , GLY A:188 , LYS A:189 , THR A:190 , THR A:191 , ARG A:216 , GLN A:222 , GLY A:268 , LYS A:324 , ASP A:326 , GLY A:349 , GLY A:351 , GLU A:352 , MG A:402 , HOH A:501 , HOH A:503 , HOH A:514 , HOH A:521 , HOH A:524 , ASN B:173 , ARG B:204 , LEU B:259 , GCP B:401binding site for residue GCP A 401
02AC2SOFTWARETHR A:190 , ASP A:213 , ASP A:265 , GCP A:401 , HOH A:501 , HOH A:503 , HOH A:530binding site for residue MG A 402
03AC3SOFTWAREGLN A:185 , ARG A:216 , GCP A:401 , ASN B:173 , GLY B:174 , GLY B:175 , GLY B:176 , LYS B:177 , THR B:178 , THR B:179 , ARG B:204 , GLN B:210 , GLY B:257 , LYS B:319 , ASP B:321 , GLY B:344 , VAL B:345 , GLY B:346 , GLU B:347 , MG B:402 , HOH B:507 , HOH B:516 , HOH B:517 , HOH B:518binding site for residue GCP B 401
04AC4SOFTWARETHR B:178 , GCP B:401 , HOH B:508 , HOH B:517 , HOH B:518binding site for residue MG B 402
05AC5SOFTWAREARG B:187 , GLU B:191 , PHE B:342binding site for residue GOL B 403
06AC6SOFTWARETHR C:190 , ASP C:213 , GCP C:402 , HOH C:504 , HOH C:505 , HOH C:510binding site for residue MG C 401
07AC7SOFTWAREGLN C:185 , GLY C:186 , VAL C:187 , GLY C:188 , LYS C:189 , THR C:190 , THR C:191 , ASP C:213 , ARG C:216 , GLN C:222 , GLY C:268 , LYS C:324 , ASP C:326 , GLY C:349 , GLY C:351 , GLU C:352 , MG C:401 , HOH C:504 , HOH C:505 , HOH C:508 , ASN D:173 , LEU D:259 , GCP D:402 , HOH D:501 , HOH D:531binding site for residue GCP C 402
08AC8SOFTWARETHR D:178 , GCP D:402 , HOH D:504 , HOH D:513 , HOH D:514binding site for residue MG D 401
09AC9SOFTWAREGLN C:185 , ARG C:216 , GCP C:402 , ASN D:173 , GLY D:174 , GLY D:175 , GLY D:176 , LYS D:177 , THR D:178 , THR D:179 , ARG D:204 , GLN D:210 , GLY D:257 , LYS D:319 , ASP D:321 , GLY D:344 , VAL D:345 , GLY D:346 , GLU D:347 , MG D:401 , HOH D:506 , HOH D:513 , HOH D:514 , HOH D:527 , HOH D:531binding site for residue GCP D 402
10AD1SOFTWAREARG D:187 , LEU D:188 , GLU D:191 , PHE D:342binding site for residue GOL D 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L3R)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys B:163 -Pro B:164
2Ala B:283 -Pro B:284
3Lys D:163 -Pro D:164
4Ala D:283 -Pro D:284

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L3R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L3R)

(-) Exons   (0, 0)

(no "Exon" information available for 5L3R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..............eeeeee.....hhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh..ee......hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhh...eeeee........hhhhhhhhhhh..eeeee.......eee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l3r A 100 KDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILG 371
                                   109       119       129       139|      154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
                                                                 139|                                                                                                                                                                                                                                  
                                                                  145                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...............eeeeeee....hhhhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhhhhh..eeeee.........hhhhhhhhhh..eeeee.......eee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l3r B  77 HHHVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 366
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..............eeeeee.....hhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh..ee......hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhh...eeeee........hhhhhhhhhhh..eeeee.......eee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l3r C  97 VLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 370
                                   106       116       126       136  ||   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         
                                                                    139|                                                                                                                                                                                                                                 
                                                                     145                                                                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...............eeeeee.....hhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhhhhh..eeeee.........hhhhhhhhhh..eeeee.......eee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l3r D  78 HHVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 366
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L3R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L3R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L3R)

(-) Gene Ontology  (18, 25)

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  5l3r
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  SR54C_ARATH | P37107
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFTSY_ARATH | O80842: 2og2 3b9q
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(-) Related Entries Specified in the PDB File

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