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(-) Description

Title :  SERINE/THREONINE-PROTEIN KINASE 40 (STK40) KINASE HOMOLOGY DOMAIN
 
Authors :  I. Durzynska, S. Uljon, S. C. Blacklow
Date :  02 Aug 16  (Deposition) - 01 Feb 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.53
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Pseudokinase Sink-Homologous Serine/Threonine-Protein Kinase Sugen Kinase 495, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Durzynska, X. Xu, G. Adelmant, S. B. Ficarro, J. A. Marto, P. Sliz, S. Uljon, S. C. Blacklow
Stk40 Is A Pseudokinase That Binds The E3 Ubiquitin Ligase Cop1.
Structure V. 25 287 2017
PubMed-ID: 28089446  |  Reference-DOI: 10.1016/J.STR.2016.12.008

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE 40
    Chains: C, B, A, D
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: STK40, SGK495, SHIK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SINK-HOMOLOGOUS SERINE/THREONINE-PROTEIN KINASE,SUGEN KINASE 495,SGK495

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5L2Q)

(-) Sites  (0, 0)

(no "Site" information available for 5L2Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L2Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L2Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L2Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L2Q)

(-) Exons   (0, 0)

(no "Exon" information available for 5L2Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee..eeeeee........eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhhhhhhh..........eeeeee.........eeeeeeee.............eeehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee.....eee......ee......ee............hhhhh..eehhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l2q A  26 GNNAKRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLEEIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCVKKMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQ 336
                                    35        45        55        65      ||80        90       100       110       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291    || 303       313       323       333   
                                                                         72|                                     118|                                                                                                                                                                   296|                                     
                                                                          78                                      130                                                                                                                                                                    299                                     


Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee........eeeeeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhh.........eeeeeee....eeeeeee.............eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee.....eee......ee..................hhhhhh....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l2q B  30 KRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLSQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQ 336
                                    39        49        59        69||      88        98       108       118|      144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334  
                                                                   70|                                   118|                                                                                                                                                                                                         
                                                                    80                                    135                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeee.....eeeeee..hhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.................eeeeee.........hhhhhheehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee......eee......ee..................hhhhhh....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l2q C  37 LGPRLGNSPVPSIVQCLARKYQLKILTLESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASW 335
                                    46        56|      |80        90       100       110       120       130||     143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333  
                                              56|     70|                                                 131|                                                                                                                                                                                                        
                                               63      79                                                  135                                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee........eeeeeeee.....eeeeeeee...hhhhhhhhhhhhhhhh..........eeeeeeee...eee......eee...eeeeeee...........eeehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeee....eeee......ee..................hhhhhh....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.............hhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l2q D  30 KRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVKKMKKRICLVLDCLCAHDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQ 336
                                    39        49        59        69||      89        99       109       119       129       139       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332    
                                                                   70|                                                                148|                                                                                                                                                                                        
                                                                    81                                                                 152
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L2Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L2Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L2Q)

(-) Gene Ontology  (21, 21)

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  5l2q
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  STK40_HUMAN | Q8N2I9
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