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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE N-TERMINAL SH3 DOMAIN OF CRKII AND A PROLINE-RICH LIGAND
 
Authors :  V. S. Bhatt, I. Krieger, J. Sacchettini, J. -H. Cho
Date :  30 Jul 16  (Deposition) - 07 Sep 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sh3, Acetylation, Amidation, Crkii, C3G, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. S. Bhatt, I. Krieger, J. Sacchettini, J. -H. Cho
Crystal Structure Of The Complex Between The N-Terminal Sh3 Domain Of Crkii And A Proline-Rich Ligand
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADAPTER MOLECULE CRK
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA
    Expression System Taxid: 561
    Fragment: UNP RESIDUES 134-191
    Gene: CRK, CRKO
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: PROTO-ONCOGENE C-CRK,P38
 
Molecule 2 - C3G DERIVED PEPTIDE
    Chains: B
    Engineered: YES
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:136 , ILE A:158 , ARG A:160 , ARG A:162 , GLU A:173 , ASP A:174 , SER A:175 , HOH A:313binding site for residue PEG A 201
2AC2SOFTWARETYR A:136 , TYR A:190binding site for residue PEG A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L23)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L23)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L23)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L23)

(-) Exons   (0, 0)

(no "Exon" information available for 5L23)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..................eeeeee.....eeeee.....eeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 5l23 A 134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 191
                                   143       153       163       173       183        


Chain B from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 5l23 B  -3 xDNSPPPALPKKRQSYx  13
                            |        6      |
                           -3-ACE          13-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L23)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L23)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L23)

(-) Gene Ontology  (44, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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  5l23
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  CRK_MOUSE | Q64010
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRK_MOUSE | Q64010: 1b07 1cka 1ckb 1ju5 1m30 1m3a 1m3b 1m3c 2ggr 5ih2

(-) Related Entries Specified in the PDB File

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