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(-) Description

Title :  SYMMETRY-BASED ASSEMBLY OF A TWO-DIMENSIONAL PROTEIN LATTICE
 
Authors :  S. Faham
Date :  27 Jul 16  (Deposition) - 29 Mar 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Design, Lattice, 2D, Assembly, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Poulos, S. Agah, N. Jallah, S. Faham
Symmetry Based Assembly Of A 2 Dimensional Protein Lattice.
Plos One V. 12 74485 2017
PubMed-ID: 28419162  |  Reference-DOI: 10.1371/JOURNAL.PONE.0174485

(-) Compounds

Molecule 1 - TRANSCRIPTION FACTOR ETV6, TRANSCRIPTION FACTOR ETV6, TRANSCRIPTION FACTOR ETV6, FERRIC UPTAKE REGULATION PROTEIN CHIMERA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: 3 X TELSAM (UNP RESIDUES 47-124) + FUR (UNP RESIDUES 3-83) WITH CONNECTING LINKERS
    Gene: ETV6, TEL, TEL1, FUR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, KLEBSIELLA PNEUMONIAE
    Organism Taxid: 9606, 573
    Synonym: ETS TRANSLOCATION VARIANT 6, ETS-RELATED PROTEIN TEL1, TEL, FERRIC UPTAKE REGULATOR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5L0P)

(-) Sites  (0, 0)

(no "Site" information available for 5L0P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L0P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L0P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L0P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L0P)

(-) Exons   (0, 0)

(no "Exon" information available for 5L0P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.hhhhhhhhhhhhhhhhhhhhh............hhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhh....hhhhhhhhhhhh.....eeehhhhhhhhhhh....hhhhhhhhhhhhhhh..eeee.......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l0p A  11 SIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDELYELLQHILKQIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQRIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 351
                                    20        30        40        50        60        70        80      |100       110       120       130       140       150       160       170   ||  188       198       208       218       228       238       248       258|      280       290       300       310       320       330       340       350 
                                                                                                       87|                                                                         174|                                                                        258|                                                                                
                                                                                                        98                                                                          183                                                                         271
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L0P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L0P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L0P)

(-) Gene Ontology  (21, 26)

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  5l0p
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  ETV6_HUMAN | P41212
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  FUR_KLEPN | P45599
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETV6_HUMAN | P41212: 1ji7 1lky 2dao 2qar 2qb0 2qb1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5L0P)