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(-) Description

Title :  STRUCTURE OF SALO
 
Authors :  O. A. Asojo
Date :  20 Jul 16  (Deposition) - 27 Jul 16  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Insect Protein, Odorant-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. A. Asojo, A. Kelleher, Z. Liu, J. Pollet, E. M. Hudspeth, W. C. Rezende, M. J. Groen, C. A. Seid, M. Abdeladhim, S. Townsend, W. De Castro, A. Mendes-Sousa, D. C. Bartholomeu, R. T. Fujiwara, M. E. Bottazzi, P. J. Hotez, B. Zhan, F. Oliveira, S. Kamhawi, J. G. Valenzuela
Structure Of Salo, A Leishmaniasis Vaccine Candidate From The Sand Fly Lutzomyia Longipalpis.
Plos Negl Trop Dis V. 11 05374 2017
PubMed-ID: 28278244  |  Reference-DOI: 10.1371/JOURNAL.PNTD.0005374

(-) Compounds

Molecule 1 - 10.7 KDA SALIVARY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS GS115
    Expression System Taxid: 644223
    Organism Common: SAND FLY
    Organism Scientific: LUTZOMYIA LONGIPALPIS
    Organism Taxid: 7200

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5KX4)

(-) Sites  (0, 0)

(no "Site" information available for 5KX4)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:6 -A:88
2A:21 -A:72
3A:63 -A:81
4B:6 -B:88
5B:21 -B:72
6B:63 -B:81

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KX4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KX4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KX4)

(-) Exons   (0, 0)

(no "Exon" information available for 5KX4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  5kx4 A  1 EFSEDCENIFHDNAYLLKLDCEAGRVDPVEYDDISDEEIYEITVDVGVSSEDQEKVAKIIRECIAQVSTQDCTKFSEIYDCYMKKKICNYYPENM 95
                                    10        20        30        40        50        60        70        80        90     


Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  5kx4 B  1 EFSEDCENIFHDNAYLLKLDCEAGRVDPVEYDDISDEEIYEITVDVGVSSEDQEKVAKIIRECIAQVSTQDCTKFSEIYDCYMKKKICNYYPE 93
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KX4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KX4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KX4)

(-) Gene Ontology  (1, 1)

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