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(-) Description

Title :  THE CRYSTAL STRUCTURE OF CARBOXYLTRANSFERASE FROM STAPHYLOCOCCUS AUREUS BOUND TO THE ANTIMICROBIAL AGENT MOIRAMIDE B.
 
Authors :  M. A. Silvers, S. Pakhomova, D. Neau, W. C. Silvers, N. Anzalone, C. M. Ta G. L. Waldrop
Date :  08 Jun 16  (Deposition) - 10 Aug 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Transferase, Antibiotic, Moiramide B, Acetyl-Coa Carboxylase, Carboxyltransferase, Enolate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Silvers, S. Pakhomova, D. B. Neau, W. C. Silvers, N. Anzalone, C. M. Taylor, G. L. Waldrop
Crystal Structure Of Carboxyltransferase From Staphylococcu Aureus Bound To The Antibacterial Agent Moiramide B.
Biochemistry V. 55 4666 2016
PubMed-ID: 27471863  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00641

(-) Compounds

Molecule 1 - ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT ALPHA
    Chains: A
    EC Number: 6.4.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: ACCA, SAUSA300_1646
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN USA300)
    Organism Taxid: 367830
    Strain: USA300
    Synonym: ACETYL-COA CARBOXYLASE CARBOXYLTRANSFERASE SUBUNIT ALPHA
 
Molecule 2 - ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA
    Chains: B
    EC Number: 6.4.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: ACCD, SAB1559C
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN BOVINE RF122 / ET3-1)
    Organism Taxid: 273036
    Strain: BOVINE RF122 / ET3-1
    Synonym: ACETYL-COA CARBOXYLASE CARBOXYLTRANSFERASE SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2SO43Ligand/IonSULFATE ION
3YT51Ligand/IonMOIRAMIDE B
4ZN1Ligand/IonZINC ION
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2SO46Ligand/IonSULFATE ION
3YT52Ligand/IonMOIRAMIDE B
4ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:185 , ARG A:295binding site for residue SO4 A 401
2AC2SOFTWAREARG A:89 , ALA A:164 , ARG A:168binding site for residue SO4 A 402
3AC3SOFTWARESER A:198 , LEU A:229 , MET B:134 , GLY B:166 , GLY B:167 , ALA B:168 , THR B:206 , GLY B:207 , GLY B:208 , ALA B:231 , GLY B:232 , VAL B:235binding site for residue YT5 B 301
4AC4SOFTWAREHIS A:83 , LYS B:262 , HOH B:407binding site for residue SO4 B 302
5AC5SOFTWAREHIS B:58 , HIS B:203 , GLU B:223 , PRO B:224 , ALA B:226 , ARG B:266binding site for residue EDO B 303
6AC6SOFTWARECYS B:33 , CYS B:36 , CYS B:52 , CYS B:55binding site for residue ZN B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KDR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His B:203 -Pro B:204

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KDR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KDR)

(-) Exons   (0, 0)

(no "Exon" information available for 5KDR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhheeeee............eeeeeeee..eeeeeeee....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhh.....eeeee........hhhhhhhhh.....hhhhhhhhhh.hhhhhhhh....eee.....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kdr A   2 LDFEKPLFEIRNKIESQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE 314
                                    11     || 33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313 
                                          17|                                                                                                                                                                                                                                                                                            
                                           30                                                                                                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......eeehhhhhhh.............hhhhhhhhhh.....ee.....ee.......hhhhhhhhhhhhhh....eeeeeeee..eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhhh..eeee.........hhhhhhhhh....hhhhhhhh....ee....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kdr B  29 IMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEV 283
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238  ||   253       263       273       283
                                                                                                                                                                                                                                              241|                                    
                                                                                                                                                                                                                                               247
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KDR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KDR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KDR)

(-) Gene Ontology  (12, 44)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        ACCA_STAA3 | Q2FG38: 2f9i

(-) Related Entries Specified in the PDB File

2f9i 2F9I REPRESENTS THE APO FORM