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(-) Description

Title :  APO STRUCTURE
 
Authors :  X. Cao, Y. Li, T. Jin
Date :  31 May 16  (Deposition) - 09 Nov 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Ntpase, Helicase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Cao, Y. Li, X. Jin, Y. Li, F. Guo, T. Jin
Molecular Mechanism Of Divalent-Metal-Induced Activation Of Ns3 Helicase And Insights Into Zika Virus Inhibitor Design
Nucleic Acids Res. 2016
PubMed: search  |  Reference-DOI: 10.1093/NAR/GKW941

(-) Compounds

Molecule 1 - ZIKA VIRUS NS3 HELICASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CL1Ligand/IonCHLORIDE ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:197 , ALA A:198 , GLY A:199 , LYS A:200 , THR A:201 , ARG A:202 , ASN A:330 , ARG A:462 , MN A:702 , HOH A:829 , HOH A:870 , HOH A:880 , HOH A:898 , HOH A:931 , HOH A:964 , HOH A:971 , HOH A:974 , HOH A:1090binding site for residue ADP A 701
2AC2SOFTWARETHR A:201 , GLU A:286 , ADP A:701 , HOH A:880 , HOH A:882 , HOH A:898binding site for residue MN A 702
3AC3SOFTWAREHIS A:195 , HOH A:840 , HOH A:1045binding site for residue MN A 703
4AC4SOFTWARETRP A:351binding site for residue EDO A 704
5AC5SOFTWAREARG A:388 , THR A:409binding site for residue CL A 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K8U)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:444 -Pro A:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K8U)

(-) Exons   (0, 0)

(no "Exon" information available for 5K8U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh...eeee..........hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh....eee........eeeeehhhhhhhhh.........eeeee.....hhhhhhhhhhhhhhhhh...eeeee..................eeee...........hhhhhh....eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhh....eeee.hhhhh.......eeee..eeeeeeee...eeeeeeeee.hhhhhhhhhh...........eeee..........hhhhhhhhhhhh............hhhhhhhh.........hhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhh..hhhhh.ee..ee.eee.....eee......hhhhh.hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k8u A 173 ETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRAAA 620
                                   182       192       202       212       222       232       242   ||  258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618  
                                                                                                   246|                                                                                                                                                                                                                                                                                                                                                                               
                                                                                                    253
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K8U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K8U)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5K8U)

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  Cis Peptide Bonds
    Gly A:444 - Pro A:445   [ RasMol ]  
 

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  A0A146CJG7_Z | A0A146CJG7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A146CJG7_Z | A0A146CJG7: 5jwh 5k8i 5k8l 5k8t

(-) Related Entries Specified in the PDB File

5jwh 5k8i 5k8l 5k8t