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(-) Description

Title :  STRUCTURE OF THE AMIDASE MUTANT E79A AT 2.3 ANGSTROM RESOLUTION
 
Authors :  S. R. Chowdhury, U. Sen
Date :  20 May 16  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  F  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  D  (1x)
Biol. Unit 6:  E  (1x)
Biol. Unit 7:  C,D  (1x)
Biol. Unit 8:  E,F  (1x)
Biol. Unit 9:  A,B  (1x)
Keywords :  Heat Shock Protein, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. R. Chowdhury, U. Sen
Structure Of The Amidase Mutant E79A At 2. 3 Angstrom Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTRACELLULAR PROTEASE/AMIDASE
    Chains: C, F, A, B, D, E
    EC Number: 4.2.1.130
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC0395_0351, VC395_A0912
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 / CLASSICAL OGAWA 395 / O395)
    Organism Taxid: 345073
    Strain: ATCC 39541 / CLASSICAL OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):   C   
Biological Unit 2 (1x):      F
Biological Unit 3 (1x): A     
Biological Unit 4 (1x):  B    
Biological Unit 5 (1x):    D  
Biological Unit 6 (1x):     E 
Biological Unit 7 (1x):   CD  
Biological Unit 8 (1x):     EF
Biological Unit 9 (1x): AB    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5K4A)

(-) Sites  (0, 0)

(no "Site" information available for 5K4A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K4A)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu B:284 -Gln B:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K4A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K4A)

(-) Exons   (0, 0)

(no "Exon" information available for 5K4A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh.hhhhh..ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a A   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a B   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain C from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh.hhhhh..ee...hhhhhhhhhhhh........hhhhhhhh...ee........eeee..eeee.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a C   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain D from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhh...ee........eeee..eeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a D   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain E from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............ee..hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhh.........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a E   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain F from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhh...ee........eeee..eeee.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k4a F   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVATLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K4A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K4A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K4A)

(-) Gene Ontology  (0, 0)

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    Glu B:284 - Gln B:285   [ RasMol ]  
 
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 Related Entries

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        A0A0H3AFW5_V | A0A0H3AFW5: 4i2n 4i46 4i4n 5jzm 5jzo

(-) Related Entries Specified in the PDB File

5jzm 5jzo