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(-) Description

Title :  CRYSTAL STRUCTURE OF AURORAB/INCENP IN COMPLEX WITH BI 811283
 
Authors :  G. Bader, S. K. Zahn, A. Zoephel
Date :  20 May 16  (Deposition) - 17 Aug 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Kinase, Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Sini, U. Gurtler, S. K. Zahn, C. Baumann, D. Rudolph, R. Baumgartinger, E. Strauss, C. Haslinger, U. Tontsch-Grunt, I. C. Waizenegger, F. Solca, G. Bader, A. Zoephel, M. Treu, U. Reiser, P. Garin-Chesa, G. Boehmelt, N. Kraut, J. Quant, G. R. Adolf
Pharmacological Profile Of Bi 847325, An Orally Bioavailable, Atp-Competitive Inhibitor Of Mek And Aurora Kinases.
Mol. Cancer Ther. V. 15 2388 2016
PubMed-ID: 27496137  |  Reference-DOI: 10.1158/1535-7163.MCT-16-0066

(-) Compounds

Molecule 1 - AURORA KINASE B-A
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ENTEROBACTERIA PHAGE L1
    Expression System Taxid: 268588
    Gene: AURKB-A, AIRK2-A
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
    Synonym: AURORA/IPL1-RELATED KINASE 2-A,XAIRK2-A,SERINE/THREONINE- PROTEIN KINASE 12-A,SERINE/THREONINE-PROTEIN KINASE AURORA-B-A, XAURORA-B
 
Molecule 2 - INNER CENTROMERE PROTEIN A
    Chains: C, D
    Engineered: YES
    Expression System: ENTEROBACTERIA PHAGE L1
    Expression System Taxid: 268588
    Gene: INCENP-A
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
    Synonym: XINCENP,MITOTIC PHOSPHOPROTEIN 130

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
16Q42Ligand/IonN-METHYL-N-(1-METHYLPIPERIDIN-4-YL)-4-{[4-({(1R,2S)-2-[(PROPAN-2-YL)CARBAMOYL]CYCLOPENTYL}AMINO)-5-(TRIFLUOROMETHYL)PYRIMIDIN-2-YL]AMINO}BENZAMIDE
2TPO2Mod. ResiduePHOSPHOTHREONINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
16Q41Ligand/IonN-METHYL-N-(1-METHYLPIPERIDIN-4-YL)-4-{[4-({(1R,2S)-2-[(PROPAN-2-YL)CARBAMOYL]CYCLOPENTYL}AMINO)-5-(TRIFLUOROMETHYL)PYRIMIDIN-2-YL]AMINO}BENZAMIDE
2TPO1Mod. ResiduePHOSPHOTHREONINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
16Q41Ligand/IonN-METHYL-N-(1-METHYLPIPERIDIN-4-YL)-4-{[4-({(1R,2S)-2-[(PROPAN-2-YL)CARBAMOYL]CYCLOPENTYL}AMINO)-5-(TRIFLUOROMETHYL)PYRIMIDIN-2-YL]AMINO}BENZAMIDE
2TPO1Mod. ResiduePHOSPHOTHREONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:215 , ARG A:246 , ARG A:247 , MET A:249 , CYS A:250 , HIS A:266 , HOH A:592 , HOH A:596 , LYS D:817binding site for residue TPO A 401
2AC2SOFTWARELEU A:99 , GLY A:100 , VAL A:107 , ALA A:120 , LEU A:154 , LEU A:170 , GLU A:171 , PHE A:172 , ALA A:173 , GLY A:176 , GLU A:177 , LEU A:223 , ALA A:233 , HOH A:537 , HOH A:569binding site for residue 6Q4 A 402
3AC3SOFTWAREARG B:140 , ARG B:215 , ARG B:246 , ARG B:247 , MET B:249 , CYS B:250 , MET B:260 , HIS B:266 , HOH B:604 , HOH B:660binding site for residue TPO B 401
4AC4SOFTWARELYS B:101 , GLY B:102 , VAL B:107 , ALA B:120 , LEU B:154 , LEU B:170 , GLU B:171 , PHE B:172 , ALA B:173 , GLY B:176 , GLU B:220 , LEU B:223 , HOH B:519 , HOH B:622binding site for residue 6Q4 B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K3Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K3Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K3Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K3Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5K3Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeeeeeee....eeeeeee....eeeeeeeeehhhhhhhhhhhhhhhhhhhhh.........eeeeee...eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee.....eee......ee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k3y A  88 FTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPVY 355
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247|      258       268       278       288       298       308       318       328       338       348       
                                                                                                                                                                                         247|                                                                                                          
                                                                                                                                                                                          249                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeeee..eeeeeeee....eeeeeeeeehhhhhhh.hhhhhhhhhhhhh.........eeeeee...eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k3y B  79 ALAEMPKRKFTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPVYQ 356
                                    88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       249       259       269       279       289       299       309       319       329       339       349       
                                                                                                                                                                                                  247|                                                                                                           
                                                                                                                                                                                                   249                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:35
                                                                   
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhh......hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                 5k3y C 803 SGNLLTQAIRQQYYKPIDVDRMYGTIDSPKLEELF 837
                                   812       822       832     


Chain D from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhh......hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 5k3y D 805 NLLTQAIRQQYYKPIDVDRMYGTIDSPKLEELFNKS 840
                                   814       824       834
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K3Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K3Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K3Y)

(-) Gene Ontology  (43, 53)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AUKBA_XENLA | Q6DE08: 2bfx 2bfy 2vgo 2vgp 2vrx 3ztx 4b8l 4b8m 4c2v 4c2w 5eyk
        INCEA_XENLA | O13024: 2bfx 2bfy 2vgo 2vgp 2vrx 3ztx 4b8l 4b8m 4c2v 4c2w 5eyk

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