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(-) Description

Title :  STRUCTURE OF NNQQNY FROM YEAST PRION SUP35 WITH ZINC ACETATE DETERMINED BY MICROED
 
Authors :  J. A. Rodriguez, M. R. Sawaya, D. Cascio, D. S. Eisenberg
Date :  18 May 16  (Deposition) - 14 Sep 16  (Release) - 30 Nov 16  (Revision)
Method :  ELECTRON CRYSTALLOGRAPHY
Resolution :  1.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (18x)
Keywords :  Amyloid, Yeast Prion, Protein Fibril (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. R. Sawaya, J. Rodriguez, D. Cascio, M. J. Collazo, D. Shi, F. E. Reyes J. Hattne, T. Gonen, D. S. Eisenberg
Ab Initio Structure Determination From Prion Nanocrystals A Atomic Resolution By Microed.
Proc. Natl. Acad. Sci. Usa V. 113 11232 2016
PubMed-ID: 27647903  |  Reference-DOI: 10.1073/PNAS.1606287113

(-) Compounds

Molecule 1 - EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 8-13
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: SUP35, ERF-3, ERF3, ERF2, G1 TO S PHASE TRANSITION PROTEIN 1, OMNIPOTENT SUPPRESSOR PROTEIN 2, PSI NO MORE PROTEIN 2, POLYPEPTIDE RELEASE FACTOR 3, TRANSLATION RELEASE FACTOR 3
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (18x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1ACY18Ligand/IonACETIC ACID
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:6 , ACY A:102binding site for residue ZN A 101
2AC2SOFTWARETYR A:6 , ZN A:101binding site for residue ACY A 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K2E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K2E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:6
                                    
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                   5k2e A 1 NNQQNY 6
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 Classification and Annotation

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(no "SCOP Domain" information available for 5K2E)

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(no "CATH Domain" information available for 5K2E)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERF3_YEAST | P05453: 1yjo 1yjp 2omm 4crn 5k2f 5k2g 5k2h

(-) Related Entries Specified in the PDB File

5k2f NNQQNY FROM YEAST PRION SUP35 WITH CADMIUM
5k2g GNNQQNY FROM YEAST PRION SUP35 IN SPACE GROUP P21
5k2h GNNQQNY FROM YEAST PRION SUP35 IN SPACE GROUP P212121