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(-) Description

Title :  NMR STRUCTURE OF FOLDSWITCH-STABLIZED KAIB IN COMPLEX WITH PSEUDO RECEIVER DOMAIN OF CIKA FROM THERMOSYNECHOCOCCUS ELONGATUS
 
Authors :  R. D. Tseng, A. L. Liwang
Date :  15 May 16  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Circadian Clock, Signaling Protein Complex, Sigaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Tseng, N. F. Goularte, A. Chavan, J. Luu, S. E. Cohen, Y. G. Chang, J. Heisler, S. Li, A. K. Michael, S. Tripathi, S. S. Golden, A. Liwang, C. L. Partch
Structural Basis Of The Day-Night Transition In A Bacterial Circadian Clock.
Science V. 355 1174 2017
PubMed-ID: 28302851  |  Reference-DOI: 10.1126/SCIENCE.AAG2516

(-) Compounds

Molecule 1 - TWO-COMPONENT SENSOR HISTIDINE KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: TLL0899
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 2 - CIRCADIAN CLOCK PROTEIN KAIB
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: KAIB, TLR0482
    Mutation: YES
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JYV)

(-) Sites  (0, 0)

(no "Site" information available for 5JYV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JYV)

(-) Cis Peptide Bonds  (5, 100)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Glu A:663 -Pro A:664
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Leu A:706 -Pro A:707
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Thr B:62 -Pro B:63
41, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Leu B:69 -Pro B:70
51, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Pro B:71 -Pro B:72

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JYV)

(-) Exons   (0, 0)

(no "Exon" information available for 5JYV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh..eeeee...hhhhhhhh...eeeee......hhhhhhhhhhhhh.....eeeeee.........eeee...hhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 5jyv A 613 EGRIVLVSEDEATSTLICSILTTAGYQVIWLVDGEVERLLALTPIAVLLAEPFSYGDVQELVDQLRQRCTPEQLKIFILGSKGNYQGVDRYIPLPIHPESFLQQVTMGLTSLATSAQ 729
                                   622       632       642       652       662       672       682       692       702       712       722       


Chain B from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeee......eeee....hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 5jyv B   1 MAPLRKTAVLKLYVAGNTPNSVRALKTLANILEKEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKVLPPPVRRIIGDLSNREKVLIALRLLAEEIGDYKDDDDK 106
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JYV)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)

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NMR Structure
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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 5jyv)
 
  Cis Peptide Bonds
    Glu A:663 - Pro A:664   [ RasMol ]  
    Leu A:706 - Pro A:707   [ RasMol ]  
    Leu B:69 - Pro B:70   [ RasMol ]  
    Pro B:71 - Pro B:72   [ RasMol ]  
    Thr B:62 - Pro B:63   [ RasMol ]  
 

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 Databases and Analysis Tools

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  5jyv
    Family and Domain Information: ProDom | SYSTERS
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    Orientation in Membranes: OPM
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Access by UniProt ID/Accession number
  KAIB_THEEB | Q79V61
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q8DKG0_THEEB | Q8DKG0
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  KAIB_THEEB | Q79V61
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAIB_THEEB | Q79V61: 1vgl 2qke 5jwo 5jwq 5jwr 5jyt
UniProtKB/TrEMBL
        Q8DKG0_THEEB | Q8DKG0: 5jyu

(-) Related Entries Specified in the PDB File

5jyt 5jyu