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(-) Description

Title :  CRYSTAL STRUCTURE OF THIOREDOXIN 1 FROM CRYPTOCOCCUS NEOFORMANS AT 1.8 ANGSTROMS RESOLUTION
 
Authors :  C. P. Bravo-Chaucanes, A. K. R. Abadio, E. S. Kioshima, M. S. S. Felipe, J. A. R. G. Barbosa
Date :  13 May 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Thioredoxin 1 Cryptococcus Neoformans X-Ray Crystallography, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. P. Bravo-Chaucanes, A. K. R. Abadio, E. S. Kioshima, M. S. S. Felipe, J. A. R. G. Barbosa
Crystal Structure Of Thioredoxin 1 From Cryptococcus Neoformans At 1. 8 Angstroms Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIOREDOXIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSE
    Expression System Taxid: 469008
    Expression System Vector Type: PET21A
    Gene: CNAG_02801
    Organism Scientific: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A
    Organism Taxid: 235443
    Strain: H99 / ATCC 208821 / CBS 10515 / FGSC 9487

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
3TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (3, 14)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2SO46Ligand/IonSULFATE ION
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:2 , LYS A:3 , LYS A:42 , GLU A:44 , SO4 A:203 , HOH A:301 , HOH A:307 , HOH A:315 , HOH A:321 , HOH B:304binding site for residue GOL A 201
2AC2SOFTWARETRP A:26 , CYS A:33 , SER A:37 , LYS A:54 , HOH A:302 , HOH A:310 , HOH A:357 , HOH A:370binding site for residue GOL A 202
3AC3SOFTWAREHIS A:39 , LYS A:42 , ASN A:96 , GOL A:201 , HOH A:303 , HOH A:382 , HOH B:304binding site for residue SO4 A 203
4AC4SOFTWAREVAL B:83 , GLU B:85 , THR B:86 , HOH B:395binding site for residue GOL B 201
5AC5SOFTWAREGLY A:89 , ALA A:90 , VAL A:91 , LYS A:94 , HOH A:328 , LYS B:12 , LYS B:70 , HOH B:341binding site for residue TRS B 202
6AC6SOFTWARELYS A:79 , LYS B:34 , HOH B:302binding site for residue SO4 B 203
7AC7SOFTWAREHIS B:39 , LYS B:42binding site for residue SO4 B 204

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:30 -A:33
2B:30 -B:33

(-) Cis Peptide Bonds  (2, 4)

Asymmetric Unit
No.Residues
1Met A:72 -Pro A:73
2Met B:72 -Pro B:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JY5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JY5)

(-) Exons   (0, 0)

(no "Exon" information available for 5JY5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeeee..eeeeeee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 5jy5 A   2 VKAIESYDEWKTLTSGSDVVVVDYWATWCGPCKMISPHFAKLEGKFPNVKFAKVDVEEQEDIAKEAQIKAMPTFVAYKDGKVIETVTGAVPAKINALLDKVAAHH 106
                                    11        21        31        41        51        61        71        81        91       101     


Chain B from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh......eeeeee..eeeeeee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 5jy5 B   2 VKAIESYDEWKTLTSGSDVVVVDYWATWCGPCKMISPHFAKLEGKFPNVKFAKVDVEEQEDIAKEAQIKAMPTFVAYKDGKVIETVTGAVPAKINALLDKVAAHH 106
                                    11        21        31        41        51        61        71        81        91       101
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JY5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JY5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JY5)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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