5JWR - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FOLDSWITCH-STABILIZED KAIB IN COMPLEX WITH THE N-TERMINAL CI DOMAIN OF KAIC AND A DIMER OF KAIA C-TERMINAL DOMAINS FROM THERMOSYNECHOCOCCUS ELONGATUS

Authors :   R. Tseng, N. F. Goularte, A. Chavan, J. Luu, Y. G. Chang, J. Heilser, S. Tr A. Liwang, C. L. Partch

Date :   12 May 16 (Deposition) - 29 Mar 17 (Release) - 29 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.61

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F  (1x)
Biol. Unit 2: C,D,G,H  (1x)

Keywords :   Transcription Regulator, Foldswitch (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Tseng, N. F. Goularte, A. Chavan, J. Luu, S. E. Cohen, Y. G. Chang, J. Heisler, S. Li, A. K. Michael, S. Tripathi, S. S. Golden, A. Liwang, C. L. Partch
Structural Basis Of The Day-Night Transition In A Bacterial Circadian Clock.
Science V. 355 1174 2017
PubMed-ID: 28302851 | Reference-DOI: 10.1126/SCIENCE.AAG2516

Molecule 1 - CIRCADIAN CLOCK PROTEIN KINASE KAIC
	Chains	:	A, C
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28B
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	KAIC, TLR0483
	Mutation	:	YES
	Organism Scientific	:	THERMOSYNECHOCOCCUS ELONGATUS
	Organism Taxid	:	197221
	Strain	:	BP-1

Molecule 2 - CIRCADIAN CLOCK PROTEIN KAIB
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28B
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	KAIB, TLR0482
	Mutation	:	YES
	Organism Scientific	:	THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
	Organism Taxid	:	197221
	Strain	:	BP-1

Molecule 3 - CIRCADIAN CLOCK PROTEIN KAIA
	Chains	:	E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28B
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	KAIA, TLR0481
	Mutation	:	YES
	Organism Scientific	:	THERMOSYNECHOCOCCUS ELONGATUS
	Organism Taxid	:	197221
	Strain	:	BP-1

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B			E	F
Biological Unit 2 (1x)	:			C	D			G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:48 , GLY A:50 , THR A:51 , GLY A:52 , LYS A:53 , THR A:54 , HOH A:407	binding site for residue PO4 A 301
2	AC2	SOFTWARE	GLY C:50 , THR C:51 , GLY C:52 , LYS C:53 , THR C:54	binding site for residue PO4 C 301

(no "SS Bond" information available for 5JWR)

Asymmetric Unit

No.	Residues
1	Asp A:146	-	Ser A:147
2	Thr B:62	-	Pro B:63
3	Leu B:69	-	Pro B:70
4	Pro B:71	-	Pro B:72
5	Asp C:146	-	Ser C:147
6	Lys D:6	-	Thr D:7
7	Thr D:62	-	Pro D:63
8	Leu D:69	-	Pro D:70
9	Pro D:71	-	Pro D:72

(no "SAP(SNP)/Variant" information available for 5JWR)

(no "PROSITE Motif" information available for 5JWR)

(no "Exon" information available for 5JWR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...hhhhhhhh..eeeee.......eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhh......eeeeeeee....eeeeeeeee........eeeeee...eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jwr A  18 EVKKIPTMIEGFDDISHGGLPQGATTLVSGTSGTGKTLFAVQFLYNGITIFNEPGIFVTFEESPQDIIKNALSFGWNLQSLIDQGKLFILDASPDPDGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDAASVVRREIFRLAFRLAQLGVTTIMTTERVDEYGPVARFGVEEFVSDNVVILRNVLERRRRTVEILKLRGTTHMKGEYPFTINNGINIFDYK 250
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207    || 219       229       239       249 
                                                                                                                                                                                                                            212|                                   
                                                                                                                                                                                                                             215

Chain B from PDB  Type:PROTEIN  Length:89
                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhh......eeeeee....eeee.....hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 5jwr B   6 KTAVLKLYVAGNTPNSVRALKTLNNILEKEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKVLPPPVRRIIGDLSNREKVLIALRLLA  94
                                    15        25        35        45        55        65        75        85

Chain C from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...hhhhhhhh..eeeee.......eee.....hhhhhhhhhhhhhhh...eeeeehhhhhh....hhhhhhhhhhhhhhhhhhh..eeeeee.........eeeeeeeee....eeeeeeeeee........eeeeee...eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jwr C  18 EVKKIPTMIEGFDDISHGGLPQGATTLVSGTSGTGKTLFAVQFLYNGITIFNEPGIFVTFEESPQDIIKNALSFGWNLQSLIDQGKLFILDASPDPDGQEVAGDFDLSALIERIQYAIRKYKATRVSIDSVTAVFQQYDAASVVRREIFRLAFRLAQLGVTTIMTTEGVEEFVSDNVVILRNVLEGERRRRTVEILKLRGTTHMKGEYPFTINNGINIFDY 249
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177      |198       208       218       228       238       248 
                                                                                                                                                                                                184|                                                     
                                                                                                                                                                                                 196

Chain D from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh......eeeeee....eeee.....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 5jwr D   6 KTAVLKLYVAGNTPNSVRALKTLNNILEKEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKVLPPPVRRIIGDLSNREKVLIALRL  92
                                    15        25        35        45        55        65        75        85

Chain E from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jwr E 150 DPQHRLSQKLKERLGYLGVYYKRDTAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLSEMYRRSIPR 281
                                   159       169       179       189       199       209       219       229       239       249       259       269       279

Chain F from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jwr F 149 VDPQHRLSQKLKERLGYLGVYYKRDTAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLSEMYRRSIPRE 282
                                   158       168       178       188       198       208       218       228       238       248       258       268       278

Chain G from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jwr G 149 VDPQHRLSQKLKERLGYLGVYYKRDTAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLSEMYRRSIPR 281
                                   158       168       178       188       198       208       218       228       238       248       258       268       278

Chain H from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jwr H 148 NVDPQHRLSQKLKERLGYLGVYYKRDTAFFFRRMSPADKRKLLDELRSIYRTIVLEYFNTKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLSEMYRRSIPRE 282
                                   157       167       177       187       197       207|      219       229       239       249       259       269       279   
                                                                                     207|                                                                        
                                                                                      210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5JWR)

(no "CATH Domain" information available for 5JWR)

(no "Pfam Domain" information available for 5JWR)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asp A:146 - Ser A:147	[ RasMol ]
		Asp C:146 - Ser C:147	[ RasMol ]
		Leu B:69 - Pro B:70	[ RasMol ]
		Leu D:69 - Pro D:70	[ RasMol ]
		Lys D:6 - Thr D:7	[ RasMol ]
		Pro B:71 - Pro B:72	[ RasMol ]
		Pro D:71 - Pro D:72	[ RasMol ]
		Thr B:62 - Pro B:63	[ RasMol ]
		Thr D:62 - Pro D:63	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	5jwr
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	KAIA_THEEB \| Q79V62
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	KAIB_THEEB \| Q79V61
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	KAIC_THEEB \| Q79V60
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		Protein-protein Interaction	:	DIP
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	2.7.11.1
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		Pathway	:	KEGG \| MetaCyc

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	KAIA_THEEB \| Q79V62
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	KAIB_THEEB \| Q79V61
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	KAIC_THEEB \| Q79V60
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UniProtKB/Swiss-Prot
	KAIA_THEEB \| Q79V62	:	1q6a 1q6b 1suy 1sv1 1v2z
	KAIB_THEEB \| Q79V61	:	1vgl 2qke 5jwo 5jwq 5jyt 5jyv
	KAIC_THEEB \| Q79V60	:	1suy 1sv1 4o0m 5jwo 5jwq

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (19, 26)

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