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(-) Description

Title :  CRYSTAL STRUCTURE OF ANTIGEN-ERAP1 DOMAIN COMPLEX
 
Authors :  L. Sui, A. Gandhi, H. -C. Guo
Date :  02 Apr 16  (Deposition) - 12 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Aminopeptidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gandhi, D. Lakshminarasimhan, Y. Sun, H. -C. Guo
Structural Insights Into The Molecular Ruler Mechanism Of The Endoplasmic Reticulum Aminopeptidase Erap1.
Sci Rep V. 1 186 2011
PubMed-ID: 22355701  |  Reference-DOI: 10.1038/SREP00186

(-) Compounds

Molecule 1 - ENDOPLASMIC RETICULUM AMINOPEPTIDASE 1
    Chains: A
    EC Number: 3.4.11.-
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 529-941
    Gene: ERAP1, APPILS, ARTS1, KIAA0525, UNQ584/PRO1154
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARTS-1,ADIPOCYTE-DERIVED LEUCINE AMINOPEPTIDASE,A-LAP, AMINOPEPTIDASE PILS,PUROMYCIN-INSENSITIVE LEUCYL-SPECIFIC AMINOPEPTIDASE,PILS-AP,TYPE 1 TUMOR NECROSIS FACTOR RECEPTOR SHEDDING AMINOPEPTIDASE REGULATOR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5J5E)

(-) Sites  (0, 0)

(no "Site" information available for 5J5E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J5E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J5E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J5E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J5E)

(-) Exons   (0, 0)

(no "Exon" information available for 5J5E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:409
                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..eeeeeeeee.....eeeeeee......eeeee...eeeee.......eeeee......ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j5e A 529 GFPLITITVRGRNVHMKQEHYMYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSEKLERMIINFEKL 948
                                   538       548 ||    568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898  ||   909       919       929       939         
                                               550|                                                                                                                                                                                                                                                                                                                                                 901|                                             
                                                561                                                                                                                                                                                                                                                                                                                                                  903
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J5E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J5E)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  5j5e
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  ERAP1_HUMAN | Q9NZ08
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERAP1_HUMAN | Q9NZ08: 2yd0 3mdj 3qnf 3rjo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5J5E)