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(-) Description

Title :  STRUCTURE OF THE SPECTRIN REPEATS 5 AND 6 OF THE PLAKIN DOMAIN OF PLECTIN
 
Authors :  E. Ortega, J. M. De Pereda
Date :  29 Mar 16  (Deposition) - 20 Jul 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytoskeleton, Plakin, Intermediate Filament, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Ortega, J. A. Manso, R. M. Buey, A. M. Carballido, A. Carabias, A. Sonnenberg, J. M. De Pereda
The Structure Of The Plakin Domain Of Plectin Reveals An Extended Rod-Like Shape.
J. Biol. Chem. V. 291 18643 2016
PubMed-ID: 27413182  |  Reference-DOI: 10.1074/JBC.M116.732909

(-) Compounds

Molecule 1 - PLECTIN,PLECTIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PLEC, PLEC1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE RESIDUES 819-888 THAT CODE FOR AN SH3 DOMAIN HAVE BEEN REPLACED BY THE GLY-SER SEQUENCE GSGSG
    Synonym: PLTN,HEMIDESMOSOMAL PROTEIN 1,HD1,PLECTIN-1,PLTN, HEMIDESMOSOMAL PROTEIN 1,HD1,PLECTIN-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5J1H)

(-) Sites  (0, 0)

(no "Site" information available for 5J1H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J1H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J1H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J1H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J1H)

(-) Exons   (0, 0)

(no "Exon" information available for 5J1H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j1h A  750 AYAQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVSGNQEAQEAVTRLEAQHQALVTLWHQLHVDMKSLLAWQSLRRDVQLIRSWSLATFRTLKPEEQRQALHSLELHYQAFLRDSQDAGGFGPEDRLMAEREYGSCSHHYQQLLQSLE 1000
                                   759       769       779       789       799       809       887       897       907       917       927       937       947       957       967       977       987       997   
                                                                                              818|                                                                                                                 
                                                                                               887                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5j1h B  750 AYAQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVNQEAQEAVTRLEAQHQALVTLWHQLHVDMKSLLAWQSLRRDVQLIRSWSLATFRTLKEEQRQALHSLELHYQAFLRDSQDAGPEDRLMAEREYGSCSHHYQQLL  996
                                   759       769       779       789       799       809       889       899       909       919       929       939     ||950       960       970||     983       993   
                                                                                              818|                                                     945|                     971|                     
                                                                                               889                                                      947                      975
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J1H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J1H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J1H)

(-) Gene Ontology  (20, 20)

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  PLEC_HUMAN | Q15149
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLEC_HUMAN | Q15149: 1mb8 2n03 2odu 2odv 3f7p 3pdy 3pe0 4gdo 4q58 4q59 5j1f 5j1g 5j1i

(-) Related Entries Specified in the PDB File

5j1f THE ENTRY D_1000218843 IS THE STRUCTURE OF THE SAME REGION OF PLECTIN OBTAINED USING A VERY SIMILAR CONSTRUCT.