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(-) Description

Title :  CYTOKINE RECEPTOR COMPLEX
 
Authors :  K. Verstraete, S. N. Savvides
Date :  28 Mar 16  (Deposition) - 05 Apr 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.55
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cytokine Inflammation Tslp Signaling Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Verstraete, S. N. Savvides
To Be Announced.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THYMIC STROMAL LYMPHOPOIETIN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Atcc Number: CRL-3022
    Expression System Cell Line: HEK293S MGAT1-/-
    Expression System Plasmid: PHL-HTSLP-N64Q-K126S-DELTA127-131
    Expression System Strain: HUMAN EMBRYONIC KIDNEY 293
    Expression System Taxid: 9606
    Expression System Variant: HEK293S MGAT1-/-
    Expression System Vector Type: PLASMID
    Gene: TSLP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE SIGNAL PEPTIDE (RESIDUES 1 - 28) IS REMOVED FROM THE MATURE PROTEIN.
 
Molecule 2 - INTERLEUKIN-7 RECEPTOR SUBUNIT ALPHA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B-MIL7ALPHA
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: IL7R
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: BEFORE CRYSTALLISATION, THE N-TERMINAL HIS-TAG (RESIDUES 1 - 17, MGSSHHHHHHSSGLVPR) WAS REMOVED BY THROMBIN CLEAVAGE.
    Synonym: IL-7RA
 
Molecule 3 - CYTOKINE RECEPTOR-LIKE FACTOR 2
    Chains: C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Atcc Number: CRL-3022
    Expression System Cell Line: HEK293S MGAT1-/-
    Expression System Plasmid: PHL-HTSLPR
    Expression System Strain: HUMAN EMBRYONIC KIDNEY 293
    Expression System Taxid: 9606
    Expression System Variant: HEK293S MGAT1-/-
    Expression System Vector Type: PLASMID
    Gene: CRLF2, CRL2, ILXR, TSLPR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYTOKINE RECEPTOR-LIKE 2,IL-XR,THYMIC STROMAL LYMPHOPOIETIN PROTEIN RECEPTOR,TSLP RECEPTOR

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG C:186binding site for residue SO4 C 301
2AC2SOFTWAREASN C:38 , LEU C:141 , SER C:142 , TYR C:143binding site for residue SO4 C 302
3AC3SOFTWAREASN A:119 , ALA A:120 , SER C:120 , SER C:121binding site for residue SO4 C 303
4AC4SOFTWAREGLU A:115 , GLN A:117 , ASN A:119 , HIS A:164 , GLU C:40binding site for Mono-Saccharide NAG A 500 bound to ASN A 119
5AC5SOFTWAREGLN C:33 , THR C:45 , ASN C:47binding site for Mono-Saccharide NAG C 305 bound to ASN C 47
6AC6SOFTWAREASN C:55 , LEU C:76binding site for Mono-Saccharide NAG C 304 bound to ASN C 55

(-) SS Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1A:34 -A:110
2A:69 -A:75
3A:90 -A:137
4B:42 -B:57
5B:74 -B:82
6B:108 -B:118
7C:71 -C:84
8C:138 -C:168
9C:180 -C:218

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J12)

(-) Exons   (0, 0)

(no "Exon" information available for 5J12)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j12 A  29 YDFTNCDFEKIKAAYLSTISKDLITYMSGTKSTEFQNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINATTTNKCLEQVSQLQGLWRRFNRPLLKQQGTKHHHH 166
                                    38        48        58        68        78        88        98       108       118  ||   139       149       159       
                                                                                                                      121|                                 
                                                                                                                       133                                 


Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeeee.........eeeeee........ee.eee..eeeeee........eeeeeee..eeeeeeeehhhhhee....eeeeeeee....eeeeeeehhhhhh.....eeeeeeeee.......eeeee...eeeee.hhh....eeeeeeeeee......ee.......eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j12 B  38 HSFWCHSQLEVDGSQHLLTCAFNDSDINTANLEFQICGALLRVKCLTLNKLQDIYFIKTSEFLLIGSSNICVKLGQKNLTCKNMAINTIVKAEAPSDLKVVYRKEANDFLVTFNAPHLKKKYLKKVKHDVAYRPARGESNWTHVSLFHTRTTIPQRKLRPKAMYEIKVRSIPHNDYFKGFWSEWSPSSTFETPE 231
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227    


Chain C from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeeehhhhhhh..eeeeee......ee...eeee..eeeeeeee......eeeeeeee..eeeeeeeee....ee.......eeee...eeeee........eeeeeeee.......eeeee...eeeee.......eeeeeeeeehhhhhh...........eeee..eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j12 C  30 VQIQIIYFNLETVQVTWNASKYSRTNLTFHYRFNGDEAYDQCTNYLLQEGHTSGCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPSSPKHVRFSWHQDAVTVTCSDLSYGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKCYSFWVRVKAMEDVYGPDTYPSDWSEVTCWQRGEIRDAC 218
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J12)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J12)

(-) Gene Ontology  (20, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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  5j12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRLF2_HUMAN | Q9HC73: 5j11
        IL7RA_MOUSE | P16872: 4nn5 4nn6 4nn7
        TSLP_HUMAN | Q969D9: 5j11 5j13

(-) Related Entries Specified in the PDB File

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