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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOLASE FROM SYNECHOCOCCUS ELONGATUS, COMPLEX WITH PHOSPHOENOLPYRUVATE
 
Authors :  J. M. Gonzalez
Date :  26 Mar 16  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Keywords :  Enolase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Gonzalez, R. Marti-Arbona, C. J. Unkefer
Crystal Structure Of Enolase From Synechococcus Elongatus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENOLASE
    Chains: A, B
    EC Number: 4.2.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ENO, SYC0886_C
    Organism Scientific: SYNECHOCOCCUS SP. (STRAIN ATCC 27144 / PCC 6301 / SAUG 1402/1)
    Organism Taxid: 269084
    Strain: ATCC 27144 / PCC 6301 / SAUG 1402/1
    Synonym: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE DEHYDRATASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA6Ligand/IonCALCIUM ION
3MG2Ligand/IonMAGNESIUM ION
4PEP2Ligand/IonPHOSPHOENOLPYRUVATE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MG-1Ligand/IonMAGNESIUM ION
4PEP8Ligand/IonPHOSPHOENOLPYRUVATE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:45 , ALA A:46 , ASP A:246 , GLU A:287 , ASP A:314 , LYS A:339 , ARG A:368 , SER A:369 , LYS A:390 , MG A:502 , CA A:503 , HOH A:631 , HOH A:644 , HOH A:671binding site for residue PEP A 501
02AC2SOFTWAREASP A:246 , GLU A:287 , ASP A:314 , PEP A:501 , HOH A:606 , HOH A:623 , HOH A:631binding site for residue MG A 502
03AC3SOFTWAREALA A:46 , PEP A:501 , HOH A:606 , HOH A:644 , HOH A:678 , HOH A:694binding site for residue CA A 503
04AC4SOFTWAREASN A:162 , HOH A:654 , HOH A:698 , HOH A:703binding site for residue CA A 504
05AC5SOFTWAREPRO A:237 , HOH A:675binding site for residue CA A 505
06AC6SOFTWARETHR A:48 , ASN A:255 , GLU A:292 , HOH A:684 , HOH A:685binding site for residue CA A 506
07AC7SOFTWAREARG A:385 , LEU A:418 , HOH A:602binding site for residue ACT A 507
08AC8SOFTWAREGLY B:45 , ALA B:46 , ASP B:246 , ASP B:314 , LYS B:339 , HIS B:367 , ARG B:368 , SER B:369 , LYS B:390 , MG B:502 , CA B:503 , HOH B:613 , HOH B:659binding site for residue PEP B 501
09AC9SOFTWAREASP B:246 , GLU B:287 , ASP B:314 , PEP B:501 , HOH B:613 , HOH B:647binding site for residue MG B 502
10AD1SOFTWAREALA B:46 , PEP B:501 , HOH B:624 , HOH B:659 , HOH B:668 , HOH B:677binding site for residue CA B 503
11AD2SOFTWARETHR B:48 , GLU B:292binding site for residue CA B 504
12AD3SOFTWAREARG B:385 , LEU B:418binding site for residue ACT B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J04)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J04)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J04)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J04)

(-) Exons   (0, 0)

(no "Exon" information available for 5J04)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee.....eeeeeeeee....eeeee.....................hhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh....ee.eeeeeeee.hhhh.......eeeee.....hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh.......eeeee.hhhh.ee..eeee..eeehhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhh...eeee......hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhhee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j04 A   5 YGTQIAEITAREILDSRGRPTVEAEVHLEDGSVGLAQVPSGASTGTFEAHELRDDDPSRYGGKGVQKAVENVSAIEDALIGLSALDQEGLDKAMIALDGTPNKKNLGANAILAVSLATAHAAATSLNLPLYRYLGGPLANVLPVPMMNVINGGAHADNNVDFQEFMIMPVGAPSFKEALRWGAEVFHALAKVLKDKGLATGVGDEGGFAPNLGSNKEALELLLTAIEAAGYKPGEQVALAMDVASSEFYKNGLYTCDGVSHEPAGMIGILADLVSQYPIVSIEDGLQEDDWSNWKTLTQQLGSTVQLVGDDLFVTNPDRLQSGIEQGVGNAVLIKLNQIGTLTETLRTIDLATRSGYRSVISHRSGETEDTTIADLAVATRAGQIKTGSLSRSERIAKYNRLLRIEAALGENALYAGAIGLGPK 428
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424    


Chain B from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee.....eeeeeeeee....eeeee.....................hhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhh....ee.eeeeeeee.hhhh.......eeeee.....hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh........eeeee.hhhh.ee..eeee..eeehhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhh...eeee......hhhhhhhhh......eeeehhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhh...ee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j04 B   5 YGTQIAEITAREILDSRGRPTVEAEVHLEDGSVGLAQVPSGASTGTFEAHELRDDDPSRYGGKGVQKAVENVSAIEDALIGLSALDQEGLDKAMIALDGTPNKKNLGANAILAVSLATAHAAATSLNLPLYRYLGGPLANVLPVPMMNVINGGAHADNNVDFQEFMIMPVGAPSFKEALRWGAEVFHALAKVLKDKGLATGVGDEGGFAPNLGSNKEALELLLTAIEAAGYKPGEQVALAMDVASSEFYKNGLYTCDGVSHEPAGMIGILADLVSQYPIVSIEDGLQEDDWSNWKTLTQQLGSTVQLVGDDLFVTNPDRLQSGIEQGVGNAVLIKLNQIGTLTETLRTIDLATRSGYRSVISHRSGETEDTTIADLAVATRAGQIKTGSLSRSERIAKYNRLLRIEAALGENALYAGAIGLGPK 428
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J04)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J04)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J04)

(-) Gene Ontology  (9, 9)

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