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(-)Asym./Biol. Unit
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(-) Description

Title :  HCMV DNA POLYMERASE PROCESSIVITY SUBUNIT UL44 AT NEUTRAL PH AND LOW SALT
 
Authors :  H. Chen, D. M. Coen, J. M. Hogle, D. J. Filman
Date :  23 Mar 16  (Deposition) - 30 Nov 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.68
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hcmv Pol Accessory Subunit, Protein-Protein Interaction, Human Cytomegalovirus, Dna Polymerase, Processivity Factor, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Chen, M. Coseno, S. B. Ficarro, M. S. Mansueto, G. Komazin-Meredith S. Boissel, D. J. Filman, J. A. Marto, J. M. Hogle, D. M. Coen
A Small Covalent Allosteric Inhibitor Of Human Cytomegalovirus Dna Polymerase Subunit Interactions.
Acs Infect Dis V. 3 112 2017
PubMed-ID: 28183184  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00079

(-) Compounds

Molecule 1 - DNA POLYMERASE PROCESSIVITY FACTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UL44
    Organism Common: HHV-5
    Organism Scientific: HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
    Organism Taxid: 10360
    Strain: AD169
    Synonym: POLYMERASE ACCESSORY PROTEIN,PAP,PROTEIN ICP36

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IXA)

(-) Sites  (0, 0)

(no "Site" information available for 5IXA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IXA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:45 -Pro A:46
2Gly A:187 -Pro A:188
3Thr B:45 -Pro B:46
4Gly B:187 -Pro B:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IXA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IXA)

(-) Exons   (0, 0)

(no "Exon" information available for 5IXA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeehhhhhhhhhhhhhhhhhhh...eeeeee...eeeeeee...eeeeeee....eee.......eeee.ee...eehhhhhh.....eeeee.....eeeeeeee..eeeeeeee...............eeeeehhhhhhhhhhhhh....eeeeeee....eeeeee....eeeee....eee.....eeeeeehhhhhhhhhhhhh....eeeeee.....eeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ixa A   8 SEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWIGPHTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYVASRNGLFAVENFLTEE 270
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157     ||180       190       200       210       220       230       240       250       260       270
                                                                                                                                                                                     163|                                                                                             
                                                                                                                                                                                      177                                                                                             


Chain B from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeehhhhhhhhhhhhhhhhhhh...eeeeee...eeeeeee...eeeeeee....eee.......eeee.ee...eehhhhhh.....eeeee.....eeeeeeee..eeeeeeee...............eeeeehhhhhhhhhh......eeeeeee....eeeee.....eeeee....eeeee...eeeeeehhhhhhhhhhhhh....eeeeee.....eeeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ixa B   8 SEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWIGPTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYVASRNGLFAVENFLTEEPF 272
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157    || 181       191       201       211       221       231       241       251       261       271 
                                                                                                                                                                                    162|                                                                                               
                                                                                                                                                                                     177
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IXA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IXA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IXA)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:187 - Pro A:188   [ RasMol ]  
    Gly B:187 - Pro B:188   [ RasMol ]  
    Thr A:45 - Pro A:46   [ RasMol ]  
    Thr B:45 - Pro B:46   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VPAP_HCMVA | P16790: 1t6l 1yyp 5iwd

(-) Related Entries Specified in the PDB File

1t6l 1yyp 5iwd