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(-) Description

Title :  CRYSTAL STRUCTURE OF HIV PROTEASE COMPLEXED WITH METHYL N-[(1S)-1-[[2-[(3S)-3-[(4-AMINOPHENYL)METHYLAMINO]-4-HYDROXY-BUTYL]PHENYL]CARBAMOYL]-2,2-DIPHENYL-ETHYL]CARBAMATE
 
Authors :  H. P. Su
Date :  21 Mar 16  (Deposition) - 18 May 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hiv, Protease, Hydrolase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Bungard, P. D. Williams, J. E. Ballard, D. J. Bennett, C. Beaulieu C. Bahnck-Teets, S. S. Carroll, R. K. Chang, D. C. Dubost, J. F. Fay, T. L. Diamond, T. J. Greshock, L. Hao, M. K. Holloway, P. J. Felock, J. J. Gesell, H. P. Su, J. J. Manikowski, D. J. Mckay, M. Miller, X. Min, C. Molinaro, O. M. Moradei, P. G. Nantermet, C. Nadeau, R. I. Sanchez, T. Satyanarayana, W. D. Shipe, S. K. Singh, V. L. Truong, S. Vijayasaradhi, C. M. Wiscount, J. P. Vacca, S. N. Crane, J. A. Mccauley
Discovery Of Mk-8718, An Hiv Protease Inhibitor Containing Novel Morpholine Aspartate Binding Group.
Acs Med. Chem. Lett. V. 7 702 2016
PubMed-ID: 27437081  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00135

(-) Compounds

Molecule 1 - PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: POL
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
16EG1Ligand/IonN-{2-[(3S)-3-{[(4-AMINOPHENYL)METHYL]AMINO}-4-HYDROXYBUTYL]PHENYL}-NALPHA-(METHOXYCARBONYL)-BETA-PHENYL-L-PHENYLALANINAMIDE
2CL4Ligand/IonCHLORIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:74 , ASN A:88 , ARG B:41binding site for residue CL A 101
2AC2SOFTWAREGLY A:49 , ILE A:50 , GLY B:49 , ILE B:50 , 6EG B:101binding site for residue CL A 102
3AC3SOFTWAREARG A:8 , ASP A:25 , GLY A:27 , GLY A:48 , ILE A:50 , ILE A:84 , CL A:102 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , GLY B:48 , GLY B:49 , PHE B:53 , HOH B:234 , HOH B:239binding site for residue 6EG B 101
4AC4SOFTWARETHR B:74 , ASN B:88 , HOH B:223binding site for residue CL B 102
5AC5SOFTWARETRP B:6binding site for residue CL B 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IVR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IVR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IVR)

(-) Exons   (0, 0)

(no "Exon" information available for 5IVR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  5ivr A  1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90         


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  5ivr B  1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IVR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IVR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IVR)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q77VV3_9HIV1 | Q77VV3: 5ivq 5ivs

(-) Related Entries Specified in the PDB File

5ivq 5ivs 5ivt